Browse Element(s) Details


OsAffx.30449.1.S1_at

Description tigr:9638.m01579
TID=OsAffx.30449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1887011/11dirigent, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18840OsAffx.265.1.S1_at11/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18840OsAffx.8264.1.S1_at3/1110+9259382..9264262transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18850OsAffx.20513.1.S1_at11/1110+9275834..9276787hypothetical protein
LOC_Os10g18860OsAffx.8275.1.S1_at11/1110+9279141..9283366retrotransposon protein, putative, unclassified
LOC_Os10g18870Os.18378.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870Os.18378.1.S1_s_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18870OsAffx.30449.1.S1_at11/1110+9285325..9286797dirigent, putative, expressed
LOC_Os10g18880OsAffx.30450.1.S1_at11/1110+9290488..9292203hypothetical protein
LOC_Os10g18890Os.46466.1.S1_at11/1110+9293329..9297181HNH endonuclease family protein, expressed
LOC_Os10g18899NANA10+9298318..9298518NA
LOC_Os10g18910OsAffx.10645.1.S1_at3/1110+9300481..9300798hypothetical protein
LOC_Os10g18920OsAffx.30451.1.S1_s_at8/1110+9301534..9302038hypothetical protein
LOC_Os10g18920OsAffx.30451.3.S1_x_at2/1110+9301534..9302038hypothetical protein
LOC_Os10g18930OsAffx.25917.1.S1_at1/1110+9306154..9307068hypothetical protein
LOC_Os10g18930OsAffx.22629.1.S1_at1/1110+9306154..9307068hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30449.1.S1_at--694--10831Chr10:9285674..9285952 (25 bp)
TTGTGGATGCCAGGTTTAATGGATC
LOC_Os10g18870
OsAffx.30449.1.S1_at--260--5011Chr10:9286486..9286510 (25 bp)
GCAGGCCGAATAATGCATCATGCAG
LOC_Os10g18870
OsAffx.30449.1.S1_at--1070--9031Chr10:9286506..9286530 (25 bp)
TGCAGCAGTCCAAGTACAAGAAATG
LOC_Os10g18870
OsAffx.30449.1.S1_at--1069--5571Chr10:9286525..9286549 (25 bp)
GAAATGGTGGAACTACTCGGAAAAT
LOC_Os10g18870
OsAffx.30449.1.S1_at--1094--351Chr10:9286552..9286576 (25 bp)
ATAATGGTGTGGTTTGATGTCTATT
LOC_Os10g18870
OsAffx.30449.1.S1_at--661--6271Chr10:9286567..9286591 (25 bp)
GATGTCTATTGTGTACATTCACGTC
LOC_Os10g18870
OsAffx.30449.1.S1_at--435--231Chr10:9286613..9286637 (25 bp)
ATATTGCTGGCAATCGTCATCAGAA
LOC_Os10g18870
OsAffx.30449.1.S1_at--887--4011Chr10:9286627..9286651 (25 bp)
CGTCATCAGAACGAAGGGCATGTGA
LOC_Os10g18870
OsAffx.30449.1.S1_at--290--7591Chr10:9286642..9286666 (25 bp)
GGGCATGTGATGTTACCGTGCTATA
LOC_Os10g18870
OsAffx.30449.1.S1_at--115--4011Chr10:9286658..9286682 (25 bp)
CGTGCTATAGCACATTTGTTTGTTT
LOC_Os10g18870
OsAffx.30449.1.S1_at--394--3111Chr10:9286692..9286716 (25 bp)
AATATGTTTTAATTGCTCTTTGTTA
LOC_Os10g18870
Target Sequence 
TTGTGGATGCCAGGTTTAATGGATCAAAGCTTCAGGTGATGGGGACTACTCCAGAAACTGGTGAGTGGGCCATTGTCGGT
GGGACTGGACAACTTGCTATGGCATATGGCACTATTCAGCACAACATAGTCAAGAACAATCCTGGCATTGAGACAACTAG
ACAGCTTGACATTCATGCATTCTATAGTACTCCACAAACACAAGCTGATGTAATGACTACAACGAATACAATAGACCAGC
AGGCCGAATAATGCATCATGCAGCAGTCCAAGTACAAGAAATGGTGGAACTACTCGGAAAATAAATAATGGTGTGGTTTG
ATGTCTATTGTGTACATTCACGTCAAAAGAAAATGTCTATTGTGTATATTGCTGGCAATCGTCATCAGAACGAAGGGCAT
GTGATGTTACCGTGCTATAGCACATTTGTTTGTTTTTGTAAAACAATATGTTTTAATTGCTCTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis