Browse Element(s) Details


OsAffx.10645.1.S1_at

Description tigr:9632.m02182
TID=OsAffx.10645.1
CNT=15
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g235009/11hypothetical protein
LOC_Os12g350503/11hypothetical protein
LOC_Os01g018103/11hypothetical protein
LOC_Os10g189103/11hypothetical protein
LOC_Os07g169203/11hypothetical protein
LOC_Os09g254803/11hypothetical protein
LOC_Os01g591703/11hypothetical protein
LOC_Os12g323703/11hypothetical protein
LOC_Os01g213903/11hypothetical protein
LOC_Os01g235203/11hypothetical protein
LOC_Os12g122802/11hypothetical protein
LOC_Os05g059602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23460NANA4+13386256..13387126hypothetical protein
LOC_Os04g23470Os.41695.15.S1_s_at9/114+13390232..13397274transposon protein, putative, Mutator sub-class
LOC_Os04g23470Os.41695.5.S1_x_at7/114+13390232..13397274transposon protein, putative, Mutator sub-class
LOC_Os04g23470Os.41695.3.S1_x_at6/114+13390232..13397274transposon protein, putative, Mutator sub-class
LOC_Os04g23470Os.41695.2.S1_x_at5/114+13390232..13397274transposon protein, putative, Mutator sub-class
LOC_Os04g23470Os.41695.4.S1_x_at1/114+13390232..13397274transposon protein, putative, Mutator sub-class
LOC_Os04g23480NANA4+13397440..13399148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g23490OsAffx.25156.5.S1_x_at1/114+13399950..13403219retrotransposon protein, putative, unclassified
LOC_Os04g23490OsAffx.25156.4.S1_x_at1/114+13399950..13403219retrotransposon protein, putative, unclassified
LOC_Os04g23500OsAffx.10645.1.S1_at9/114+13408651..13412997hypothetical protein
LOC_Os04g23500OsAffx.10645.2.S1_x_at2/114+13408651..13412997hypothetical protein
LOC_Os04g23510OsAffx.3869.1.S1_at11/114+13414305..13414664hypothetical protein
LOC_Os04g23520Os.46306.1.S1_x_at2/114+13426378..13429479transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g23530Os.45976.1.S1_x_at4/114+13432239..13435982transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10645.1.S1_at--1105--18516Chr10:9300736..9300760 (25 bp)
ACGACGATGCGGTCAGGCCTAGTTG
LOC_Os10g18910
OsAffx.10645.1.S1_at--11--84317Chr10:9340268..9340292 (25 bp)
GGCCTAGTTGGCTTCTTTATTCGGA
NONE
OsAffx.10645.1.S1_at--108--103516Chr10:9340283..9340307 (25 bp)
TTTATTCGGAATGGGCTGCTCCTTA
NONE
OsAffx.10645.1.S1_at--102--4791NONE
GCTCCTTAATGCCTAATCTCAGTTG
NONE
OsAffx.10645.1.S1_at--480--6031NONE
GAGATGTCTCGAAGAGGCCTCTTAA
NONE
OsAffx.10645.1.S1_at--389--6551Chr04:13410411..13410435 (25 bp)
GATTATTTTCTCATGCAGGCCTATT
LOC_Os04g23500
OsAffx.10645.1.S1_at--637--8891Chr04:13409969..13409991 (23 bp)
TGAGTGCCGTTGTTGTCCATCTGGA
LOC_Os04g23500
OsAffx.10645.1.S1_at--947--6091Chr04:13409946..13409970 (25 bp)
GAGTGCCGCATCAGGTAGGCCTCAA
LOC_Os04g23500
OsAffx.10645.1.S1_at--111--6931Chr04:13409932..13409956 (25 bp)
GTAGGCCTCAACGTGCACTTGCAGT
LOC_Os04g23500
OsAffx.10645.1.S1_at--578--8551Chr04:13409893..13409917 (25 bp)
TGGAGGACATCAGTAACTCACCCAA
LOC_Os04g23500
OsAffx.10645.1.S1_at--682--1211Chr04:13409852..13409876 (25 bp)
AGTTATCTTTTCTCTGGCAATTCTA
LOC_Os04g23500
Target Sequence 
ACGACGATGCGGTCAGGCCTAGTTGGCTTCTTTATTCGGAATGGGCTGCTCCTTAATGCCTAATCTCAGTTGGAGATGTC
TCGAAGAGGCCTCTTAAGAGGCCCGTCTACAAAAATAGATTATTTTCTCATGCAGGCCTATTAAGAGATGAGTGCCGTTG
TTGTCCATCTGGAGTGCCGCATCAGGTAGGCCTCAACGTGCACTTGCAGTCTGCAGTTGGTGACTGGAGGACATCAGTAA
CTCACCCAAACATATCAATACAGGGAGTTATCTTTTCTCTGGCAATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis