Browse Element(s) Details


OsAffx.10645.2.S1_x_at

Description tigr:9629.m06661
TID=OsAffx.10645.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6707011/11hypothetical protein
LOC_Os09g254802/11hypothetical protein
LOC_Os04g235002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10645.2.S1_x_at--692--10034Chr07:16128250..16128274 (25 bp)
TAGTCTCTTAATGCCTAATGGGCTG
NONE
OsAffx.10645.2.S1_x_at--842--10494Chr07:16128257..16128281 (25 bp)
TTAATGCCTAATGGGCTGCTCCTGC
NONE
OsAffx.10645.2.S1_x_at--785--4912Chr01:39265990..39266014 (25 bp)
GCTTCCTTCTTCAGAATTTTGTCGA
LOC_Os01g67070
OsAffx.10645.2.S1_x_at--268--5492Chr01:39266053..39266077 (25 bp)
GAAAAAACCCCATATCATTTCCACT
LOC_Os01g67070
OsAffx.10645.2.S1_x_at--311--12913Chr10:9340460..9340484 (25 bp)
AGAGATTACCGTTTCCATTTCCGAT
NONE
OsAffx.10645.2.S1_x_at--147--68523Chr10:9340470..9340494 (25 bp)
GTTTCCATTTCCGATACCGACAATT
NONE
OsAffx.10645.2.S1_x_at--1124--1922Chr10:9340476..9340500 (25 bp)
ATTTCCGATACCGACAATTACCGAT
NONE
OsAffx.10645.2.S1_x_at--140--4079Chr12:2618527..2618629 (25 bp)
CGACAATTACCGATACCGACTGAAA
NONE
OsAffx.10645.2.S1_x_at--423--4097Chr10:19052784..19052808 (25 bp)
CGACTGAAACGGTCGGTGCAAACCG
NONE
OsAffx.10645.2.S1_x_at--79--10331Chr01:39266196..39266220 (25 bp)
TTTCACCCCTAGGAAGAACACGGTG
LOC_Os01g67070
OsAffx.10645.2.S1_x_at--774--3731Chr01:39266203..39266227 (25 bp)
CCTAGGAAGAACACGGTGGTGCCTG
LOC_Os01g67070
Target Sequence 
TAGTCTCTTAATGCCTAATGGGCTGCTCCTGCTCCTGCTAGCCAGGCCCAGCCGGCTTCCTTCTTCAGAATTTTGTCGAA
AATTACCGATAAAAAACGGTTACCGACCAAACGGTCGGAAAAAACCCCATATCATTTCCACTACCATTTCCGAAAGAGAT
TACCGTTTCCATTTCCGATACCGACAATTACCGATACCGACTGAAACGGTCGGTGCAAACCGGAAACGGAAGCCGGAATT
CTCGGAAATTTCCGTACCGTTTTCACCCCTAGGAAGAACACGGTGGTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10645.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis