Browse Element(s) Details

OsAffx.12420.1.S1_at

Description

tigr:9630.m03856
TID=OsAffx.12420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04960	2/11	hypothetical protein
LOC_Os05g39440	1/11	hypothetical protein
LOC_Os08g23450	1/11	hypothetical protein
LOC_Os01g67080	1/11	hypothetical protein
LOC_Os05g09330	1/11	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g19270	1/11	hypothetical protein
LOC_Os05g23570	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04910	Os.16783.1.S1_at	10/11	6	+	2156496..2159577	hydrolase, NUDIX family protein, expressed
LOC_Os06g04920	Os.10583.1.S1_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04920	Os.10583.1.S1_s_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04930	Os.3571.2.S1_s_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	OsAffx.15267.1.S1_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.3571.1.S1_at	2/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.55511.1.S1_at	1/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04940	Os.37255.1.A1_at	10/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04940	Os.38638.3.S1_x_at	3/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04950	Os.38638.2.S1_at	11/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	OsAffx.27459.4.S1_at	6/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	Os.38638.3.S1_x_at	4/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04960	OsAffx.12420.1.S1_at	2/11	6	+	2183984..2187338	hypothetical protein
LOC_Os06g04970	Os.17050.1.A1_at	10/11	6	+	2188914..2193837	expressed protein
LOC_Os06g04980	Os.3577.1.S1_x_at	5/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	Os.3577.2.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	OsAffx.4692.1.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04990	Os.38638.1.S1_at	11/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.38638.3.S1_x_at	7/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.37255.1.A1_at	1/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g05000	OsAffx.27459.2.S1_s_at	11/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	Os.38638.3.S1_x_at	2/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	OsAffx.27459.4.S1_at	1/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_x_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	Os.38638.3.S1_x_at	5/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.4.S1_s_at	11/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.3.S1_x_at	4/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0045449	biological_process	regulation of transcription
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.12420.1.S1_at--218--599	1	Chr02:24187778..24187802 (25 bp)	GAGACACACAACTTGTCGACGTTTG	NONE
OsAffx.12420.1.S1_at--662--687	1	Chr02:24187739..24187763 (25 bp)	GTATTTGTATGTATGGGGATCCTCG	NONE
OsAffx.12420.1.S1_at--328--765	1	Chr02:24187724..24187748 (25 bp)	GGGATCCTCGGTACCAGGTTATATG	NONE
OsAffx.12420.1.S1_at--1037--55	2	Chr04:15438939..15439269 (25 bp)	ATCCTCGGTACCAGGTTATATGCGA	NONE
OsAffx.12420.1.S1_at--1100--427	2	Chr04:15439251..15439271 (21 bp)	CCTCGGTACCAGGTTATATGCGAGA	NONE
OsAffx.12420.1.S1_at--768--5	47	Chr12:25350420..25350552 (25 bp)	ATTGAGATCACACAAGTACAATATT	NONE
OsAffx.12420.1.S1_at--888--847	7	Chr12:13582149..13582169 (21 bp)	TGGCAGCATGGATAACCAACTCGTA	NONE
OsAffx.12420.1.S1_at--1086--765	15	Chr12:18534252..18534272 (21 bp)	GGGATGTCTAGGCTAATCTCTGATG	NONE
OsAffx.12420.1.S1_at--862--715	24	Chr12:18534253..18534272 (20 bp)	GTCTAGGCTAATCTCTGATGGATCT	NONE
OsAffx.12420.1.S1_at--1034--975	1	Chr02:24187400..24187422 (23 bp)	TAATCTCTGATGGATCTAGCGGTCG	NONE
OsAffx.12420.1.S1_at--340--45	1	Chr02:24187400..24187420 (21 bp)	ATCTCTGATGGATCTAGCGGTCGGG	NONE

Target Sequence

GAGACACACAACTTGTCGACGTTTGAGGTCGCGACTACGGTATTTGTATGTATGGGGATCCTCGGTACCAGGTTATATGC
GAGATTGAGATCACACAAGTACAATATTTGGAATAACCTATCTAGCTGTCGTCGACTTGGCAGCATGGATAACCAACTCG
TAGTCGATGACGGGGTAGTCTTCCTCCTCGAATATGAACTCATCGAGATCAGAGATGGTGCTAGATCCCTCTTGCTGGCC
TCCATAGGCACCGGATGGGGGATGTCTAGGCTAATCTCTGATGGATCTAGCGGTCGGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis