Browse Element(s) Details

Os.17050.1.A1_at

Description

gb:BI812068
DB_XREF= gi:16577973
DB_XREF=C005G11
CLONE=C005G11
TID=Os.17050.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17050 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565878.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04970	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04920	Os.10583.1.S1_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04920	Os.10583.1.S1_s_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04930	Os.3571.2.S1_s_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	OsAffx.15267.1.S1_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.3571.1.S1_at	2/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.55511.1.S1_at	1/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04940	Os.37255.1.A1_at	10/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04940	Os.38638.3.S1_x_at	3/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04950	Os.38638.2.S1_at	11/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	OsAffx.27459.4.S1_at	6/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	Os.38638.3.S1_x_at	4/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04960	OsAffx.12420.1.S1_at	2/11	6	+	2183984..2187338	hypothetical protein
LOC_Os06g04970	Os.17050.1.A1_at	10/11	6	+	2188914..2193837	expressed protein
LOC_Os06g04980	Os.3577.1.S1_x_at	5/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	Os.3577.2.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	OsAffx.4692.1.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04990	Os.38638.1.S1_at	11/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.38638.3.S1_x_at	7/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.37255.1.A1_at	1/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g05000	OsAffx.27459.2.S1_s_at	11/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	Os.38638.3.S1_x_at	2/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	OsAffx.27459.4.S1_at	1/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_x_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	Os.38638.3.S1_x_at	5/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.4.S1_s_at	11/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.3.S1_x_at	4/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05030	Os.31312.5.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05030	Os.31312.2.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17050.1.A1_at--250--983	1	Chr06:2193059..2193170 (25 bp)	TAAAAAGTTTATCCCAGTTGCTGAA	LOC_Os06g04970
Os.17050.1.A1_at--617--245	1	Chr06:2193210..2193234 (25 bp)	AAAATTCTGATGTCTCTACTTGCCA	LOC_Os06g04970
Os.17050.1.A1_at--153--249	1	NONE	AACAGCTTGATGTTCGCAAGGCAAA	NONE
Os.17050.1.A1_at--796--601	1	Chr06:2193425..2193449 (25 bp)	GAGAGATGTCCTCGAGATCTGATAA	LOC_Os06g04970
Os.17050.1.A1_at--1035--867	1	Chr06:2193516..2193540 (25 bp)	TGTGACTTGTTTTTGGAGGTGACCA	LOC_Os06g04970
Os.17050.1.A1_at--1085--775	1	Chr06:2193533..2193557 (25 bp)	GGTGACCATAGTTTTGAATGCTCAA	LOC_Os06g04970
Os.17050.1.A1_at--385--909	1	Chr06:2193551..2193575 (25 bp)	TGCTCAAGGAGACCTGTTGCATCTT	LOC_Os06g04970
Os.17050.1.A1_at--476--667	1	Chr06:2193566..2193590 (25 bp)	GTTGCATCTTCCTATGTTTGAATCT	LOC_Os06g04970
Os.17050.1.A1_at--945--595	1	Chr06:2193595..2193619 (25 bp)	GAGAATTACTGTTGTTCCTTTATAA	LOC_Os06g04970
Os.17050.1.A1_at--585--749	1	Chr06:2193723..2193747 (25 bp)	GTGGTTTGCAAGTCATCTGTATTGA	LOC_Os06g04970
Os.17050.1.A1_at--303--677	1	Chr06:2193741..2193765 (25 bp)	GTATTGATTCCTGAAACCCATTCCA	LOC_Os06g04970

Target Sequence

TAAAAAGTTTATCCCAGTTGCTGAAGGGGAGGGAATGGGCAACCTGGGGAAACAGCAGAATGACAAAATTCTGATGTCTC
TACTTGCCAGAAACTCTGAACAGCTTGATGTTCGCAAGGCAAACACAATGTACAAGGTGAAGAAGGAAAAGCGAAGAAGG
AAAGACAGAGAGATGTCCTCGAGATCTGATAAGNTCAAGCCCCAGAAGNNACCTTTCAAGAAATNATCTAAGAAAAAAGC
TTAGGTCAACATCTTTCNTGTGACTTGTTTTTGGAGGTGACCATAGTTTTGAATGCTCAAGGAGACCTGTTGCATCTTCC
TATGTTTGAATCTATGGGAGAATTACTGTTGTTCCTTTATAACTGGTTAAGAGTTATGACATAGGCCTGAATGATGATAT
AACAAGATCACAAATCTCTGTTATGCNNNCNTGCTATGTGCGTATTATATTTTCAAATTTTGTTCGATGTGGTTTGCAAG
TCATCTGTATTGATTCCTGAAACCCATTCCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis