Browse Element(s) Details


OsAffx.4692.1.S1_at

Description tigr:9634.m00103
TID=OsAffx.4692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0202811/11EYA conserved domain containing protein, expressed
LOC_Os06g049801/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02000Os.52419.1.S1_at11/116+563535..566659Uridylate kinase, putative, expressed
LOC_Os06g02010NANA6+572964..573323hypothetical protein
LOC_Os06g02019Os.10689.1.S1_at11/116+579671..585449Cytochrome P450 88A1, putative, expressed
LOC_Os06g02028OsAffx.4692.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028Os.12721.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028OsAffx.4692.1.S1_x_at10/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02040Os.31022.1.S1_at11/116+592578..593131Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054OsAffx.10373.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.10373.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02070OsAffx.10371.1.S1_at11/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02070OsAffx.20604.2.S1_at2/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02080OsAffx.15226.1.S1_at8/116+612912..613862hypothetical protein
LOC_Os06g02090OsAffx.15227.1.S1_s_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02090OsAffx.15227.2.S1_x_at11/116+615415..617865hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0030946molecular_functionprotein tyrosine phosphatase activity, metal-dependent
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4692.1.S1_at--874--10851Chr06:589213..589658 (25 bp)
TTGGCTTTCTTCAGCACTTATGTGG
LOC_Os06g02028
OsAffx.4692.1.S1_at--660--8291Chr06:589215..589660 (25 bp)
GGCTTTCTTCAGCACTTATGTGGCA
LOC_Os06g02028
OsAffx.4692.1.S1_at--380--4891Chr06:589216..589661 (25 bp)
GCTTTCTTCAGCACTTATGTGGCAT
LOC_Os06g02028
OsAffx.4692.1.S1_at--282--10571Chr06:589219..589664 (25 bp)
TTCTTCAGCACTTATGTGGCATAAT
LOC_Os06g02028
OsAffx.4692.1.S1_at--462--10511Chr06:589646..589667 (22 bp)
TTCAGCACTTATGTGGCATAATCAG
LOC_Os06g02028
OsAffx.4692.1.S1_at--511--2052Chr06:589649..589673 (25 bp)
ACTTATGTGGCATAATCAGATGCTT
LOC_Os06g02028
OsAffx.4692.1.S1_at--457--8232Chr06:589657..589681 (25 bp)
GGCATAATCAGATGCTTATGTGGTA
LOC_Os06g02028
OsAffx.4692.1.S1_at--222--4891Chr06:589670..589694 (25 bp)
GCTTATGTGGTATAATCGGGTGCTT
LOC_Os06g02028
OsAffx.4692.1.S1_at--489--10111Chr06:589673..589697 (25 bp)
TATGTGGTATAATCGGGTGCTTATG
LOC_Os06g02028
OsAffx.4692.1.S1_at--286--7331Chr06:589689..589713 (25 bp)
GTGCTTATGCGGCTTAAGCTGTACA
LOC_Os06g02028
OsAffx.4692.1.S1_at--958--9071Chr06:589690..589714 (25 bp)
TGCTTATGCGGCTTAAGCTGTACAA
LOC_Os06g02028
Target Sequence 
TTGGCTTTCTTCAGCACTTATGTGGCATAATCAGATGCTTATGTGGTATAATCGGGTGCTTATGCGGCTTAAGCTGTACA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis