Browse Element(s) Details


Os.31022.1.S1_at

Description gb:AK107973.1
DB_XREF= gi:32993182
TID=Os.31022.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0514G12.41 (P0514G12.41), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-D09, full insert sequence.
FL= gb:AK107973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0204011/11Late embryogenesis abundant group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02010NANA6+572964..573323hypothetical protein
LOC_Os06g02019Os.10689.1.S1_at11/116+579671..585449Cytochrome P450 88A1, putative, expressed
LOC_Os06g02028OsAffx.4692.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028Os.12721.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028OsAffx.4692.1.S1_x_at10/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02040Os.31022.1.S1_at11/116+592578..593131Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054OsAffx.10373.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.10373.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02070OsAffx.10371.1.S1_at11/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02070OsAffx.20604.2.S1_at2/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02080OsAffx.15226.1.S1_at8/116+612912..613862hypothetical protein
LOC_Os06g02090OsAffx.15227.1.S1_s_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02090OsAffx.15227.2.S1_x_at11/116+615415..617865hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31022.1.S1_at--931--931Chr06:592843..592867 (25 bp)
AGGACAAGGCCCTCCACCGCGAGGA
LOC_Os06g02040
Os.31022.1.S1_at--1116--6211Chr06:592866..592890 (25 bp)
GAGGCCATCCAGCACAGGCTCCATA
LOC_Os06g02040
Os.31022.1.S1_at--849--891Chr06:592881..592905 (25 bp)
AGGCTCCATAAGCATGGCGCCGGAA
LOC_Os06g02040
Os.31022.1.S1_at--377--1571Chr06:592975..592999 (25 bp)
AGCTAGTATGCACGCATGTCTCTCT
LOC_Os06g02040
Os.31022.1.S1_at--346--771Chr06:592990..593014 (25 bp)
ATGTCTCTCTGTGCTGCTAATTATC
LOC_Os06g02040
Os.31022.1.S1_at--938--4831Chr06:593005..593029 (25 bp)
GCTAATTATCGTAACAGTTTCCACT
LOC_Os06g02040
Os.31022.1.S1_at--178--6851Chr06:593021..593045 (25 bp)
GTTTCCACTAATCAATCTACTTACA
LOC_Os06g02040
Os.31022.1.S1_at--787--2651Chr06:593055..593079 (25 bp)
AAGCCAGCCAGTGTGCATGTAATCT
LOC_Os06g02040
Os.31022.1.S1_at--550--4991Chr06:593069..593093 (25 bp)
GCATGTAATCTGTACTGTGTGCCAG
LOC_Os06g02040
Os.31022.1.S1_at--198--7471Chr06:593085..593109 (25 bp)
GTGTGCCAGACAAGATATCAGTGAT
LOC_Os06g02040
Os.31022.1.S1_at--644--6511Chr06:593107..593131 (25 bp)
GATATATCTATCGAGGTTGTTAATT
LOC_Os06g02040
Target Sequence 
AGGACAAGGCCCTCCACCGCGAGGAGGCCATCCAGCACAGGCTCCATAAGCATGGCGCCGGAACCACCGCCGGCGTTCGT
CCGACCGCCGCGGCGCCGGCGCCGCACCTCCCACCTGCTAGCTACTACTAGTAGCTAGTATGCACGCATGTCTCTCTGTG
CTGCTAATTATCGTAACAGTTTCCACTAATCAATCTACTTACAATAAATAATAAGCCAGCCAGTGTGCATGTAATCTGTA
CTGTGTGCCAGACAAGATATCAGTGATATATCTATCGAGGTTGTTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis