Browse Element(s) Details

OsAffx.10373.1.S1_x_at

Description

tigr:9634.m04646
TID=OsAffx.10373.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02054	11/11	F-box domain containing protein
LOC_Os06g47680	11/11	F-box domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02010	NA	NA	6	+	572964..573323	hypothetical protein
LOC_Os06g02019	Os.10689.1.S1_at	11/11	6	+	579671..585449	Cytochrome P450 88A1, putative, expressed
LOC_Os06g02028	OsAffx.4692.1.S1_at	11/11	6	+	586544..591158	EYA conserved domain containing protein, expressed
LOC_Os06g02028	Os.12721.1.S1_at	11/11	6	+	586544..591158	EYA conserved domain containing protein, expressed
LOC_Os06g02028	OsAffx.4692.1.S1_x_at	10/11	6	+	586544..591158	EYA conserved domain containing protein, expressed
LOC_Os06g02040	Os.31022.1.S1_at	11/11	6	+	592578..593131	Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054	OsAffx.10373.1.S1_x_at	11/11	6	+	596333..600697	F-box domain containing protein
LOC_Os06g02054	OsAffx.28160.1.S1_at	11/11	6	+	596333..600697	F-box domain containing protein
LOC_Os06g02054	OsAffx.28160.1.S1_x_at	11/11	6	+	596333..600697	F-box domain containing protein
LOC_Os06g02054	OsAffx.10373.1.S1_at	11/11	6	+	596333..600697	F-box domain containing protein
LOC_Os06g02070	OsAffx.10371.1.S1_at	11/11	6	+	605084..606675	retrotransposon protein, putative, unclassified
LOC_Os06g02070	OsAffx.20604.2.S1_at	2/11	6	+	605084..606675	retrotransposon protein, putative, unclassified
LOC_Os06g02080	OsAffx.15226.1.S1_at	8/11	6	+	612912..613862	hypothetical protein
LOC_Os06g02090	OsAffx.15227.1.S1_s_at	11/11	6	+	615415..617865	hAT family dimerisation domain containing protein
LOC_Os06g02090	OsAffx.15227.2.S1_x_at	11/11	6	+	615415..617865	hAT family dimerisation domain containing protein
LOC_Os06g02100	Os.49022.1.S1_at	11/11	6	+	622552..625087	F-box domain containing protein, expressed
LOC_Os06g02110	Os.34056.1.S1_at	11/11	6	+	625262..627762	F-box domain containing protein, expressed
LOC_Os06g02110	Os.55536.1.S1_at	1/11	6	+	625262..627762	F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.10373.1.S1_x_at--827--215	2	Chr06:596868..596892 (25 bp)	ACAGCTTCATGGTGCTCCACCCAGG	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--440--349	2	Chr06:596889..596913 (25 bp)	CAGGCTATCTCCAGGACACCGCCTT	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--592--949	2	Chr06:596952..596976 (25 bp)	TCTCCGGCAGCATCGAGATCACGTC	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--154--335	2	Chr06:597128..597152 (25 bp)	CACGAGATGCTCTGCGTGGAGACGC	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--203--53	3	Chr06:597287..597311 (25 bp)	ATCGAGCTGTTCGCCGGCAGGCTGC	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--139--323	2	Chr06:597331..597355 (25 bp)	CAAGAGGTTCCTGCAAATGGAGGAT	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--815--229	2	Chr06:597345..597369 (25 bp)	AAATGGAGGATTGCGACAAGTTGAT	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--214--57	2	Chr06:597377..597401 (25 bp)	ATCCTGCAAGGGATCATGCCTGGCC	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--715--901	2	Chr06:597381..597405 (25 bp)	TGCAAGGGATCATGCCTGGCCGCTG	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--254--59	2	Chr06:597392..597416 (25 bp)	ATGCCTGGCCGCTGGAAGTACGTCC	LOC_Os06g02054
OsAffx.10373.1.S1_x_at--30--449	2	Chr06:597394..597418 (25 bp)	GCCTGGCCGCTGGAAGTACGTCCAA	LOC_Os06g02054

Target Sequence

ACAGCTTCATGGTGCTCCACCCAGGCTATCTCCAGGACACCGCCTTCCCGTCGCTGGAGGAGCTNCANATCTCCGGCTGC
ACCCTCTCCGGCAGCATCGAGATCACGTCNGCCACCATGCCGCGCCTCAAGCACCTCCGCATCGNCGANGTCAGCNTCNT
NTCGCTCGGCACGGNGGCCGCNATCNCCGTCCTCGCCGANGAGCTGNCCACGCTGCGCGTGTCCTGCCACGACGGCGGCA
AGCCCGACCCGCCGNCCAGNCACGAGATGCTCTGCGTGGAGACGCNCTTCCGCGCCAGCTTCACCGAGTACTCGTNCTTC
CGCCTGCGCGCNCCCAAGCTGCGGGTNTTCGANTGGCGCTGCNGCTACGCCAAGGAGGTGCGCGTCGACGCCGTCGGCCG
CCNNNTCTCCGACGTCGTNATCGAGCTGTTCGCCGGCAGGCTGCCTCGNTGCTACAACGAGGCCAAGAGGTTCCTGCAAA
TGGAGGATTGCGACAAGTTGATGAANNACATCCTGCAAGGGATCATGCCTGGCCGCTGGAAGTACGTCCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis