Browse Element(s) Details


OsAffx.15226.1.S1_at

Description tigr:9634.m00108
TID=OsAffx.15226.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g020808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02028OsAffx.4692.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028Os.12721.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028OsAffx.4692.1.S1_x_at10/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02040Os.31022.1.S1_at11/116+592578..593131Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054OsAffx.10373.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.10373.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02070OsAffx.10371.1.S1_at11/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02070OsAffx.20604.2.S1_at2/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02080OsAffx.15226.1.S1_at8/116+612912..613862hypothetical protein
LOC_Os06g02090OsAffx.15227.1.S1_s_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02090OsAffx.15227.2.S1_x_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02100Os.49022.1.S1_at11/116+622552..625087F-box domain containing protein, expressed
LOC_Os06g02110Os.34056.1.S1_at11/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02110Os.55536.1.S1_at1/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02120Os.21199.1.S1_s_at11/116+628710..632784pentatricopeptide, putative, expressed
LOC_Os06g02130Os.15324.1.S1_at11/116+633263..639451G-protein alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15226.1.S1_at--666--4711Chr06:613782..613806 (25 bp)
GCTGGCTGCTGGCAGCGTCGGCCGT
LOC_Os06g02080
OsAffx.15226.1.S1_at--981--7191NONE
GTCGGGACGCCGGATCTATATCAAC
NONE
OsAffx.15226.1.S1_at--844--7631NONE
GGGACGCCGGATCTATATCAACTTC
NONE
OsAffx.15226.1.S1_at--1137--5791NONE
GACGCCGGATCTATATCAACTTCTT
NONE
OsAffx.15226.1.S1_at--210--4491Chr06:612988..613008 (21 bp)
GCCGGATCTATATCAACTTCTTCCA
LOC_Os06g02080
OsAffx.15226.1.S1_at--674--97175Chr12:18409558..18409577 (20 bp)
TCAACTTCTTCCAAATCATCGGCCG
NONE
OsAffx.15226.1.S1_at--194--105581Chr12:18409558..18409582 (25 bp)
TTCTTCCAAATCATCGGCCGACATG
NONE
OsAffx.15226.1.S1_at--777--36344Chr12:18409560..18409584 (25 bp)
CTTCCAAATCATCGGCCGACATGAA
NONE
OsAffx.15226.1.S1_at--665--4131Chr12:18409567..18409587 (21 bp)
ATCATCGGCCGACATGAAACCATGT
NONE
OsAffx.15226.1.S1_at--483--651Chr06:612949..612973 (25 bp)
ATGAAACCATGTCCCAACTTGCCAT
LOC_Os06g02080
OsAffx.15226.1.S1_at--447--3511Chr06:612942..612966 (25 bp)
CATGTCCCAACTTGCCATCGAGATC
LOC_Os06g02080
Target Sequence 
GCTGGCTGCTGGCAGCGTCGGCCGTCGGGACTCGGGCGGGGACGGGAGCGGGATGTCGGGACGCCGGATCTATATCAACT
TCTTCCAAATCATCGGCCGACATGAAACCATGTCCCAACTTGCCATCGAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis