Browse Element(s) Details

Os.21199.1.S1_s_at

Description

gb:BQ908100
DB_XREF= gi:22306878
DB_XREF=T002E03
CLONE=T002E03
TID=Os.21199.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.21199 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02120	11/11	pentatricopeptide, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02070	OsAffx.10371.1.S1_at	11/11	6	+	605084..606675	retrotransposon protein, putative, unclassified
LOC_Os06g02070	OsAffx.20604.2.S1_at	2/11	6	+	605084..606675	retrotransposon protein, putative, unclassified
LOC_Os06g02080	OsAffx.15226.1.S1_at	8/11	6	+	612912..613862	hypothetical protein
LOC_Os06g02090	OsAffx.15227.1.S1_s_at	11/11	6	+	615415..617865	hAT family dimerisation domain containing protein
LOC_Os06g02090	OsAffx.15227.2.S1_x_at	11/11	6	+	615415..617865	hAT family dimerisation domain containing protein
LOC_Os06g02100	Os.49022.1.S1_at	11/11	6	+	622552..625087	F-box domain containing protein, expressed
LOC_Os06g02110	Os.34056.1.S1_at	11/11	6	+	625262..627762	F-box domain containing protein, expressed
LOC_Os06g02110	Os.55536.1.S1_at	1/11	6	+	625262..627762	F-box domain containing protein, expressed
LOC_Os06g02120	Os.21199.1.S1_s_at	11/11	6	+	628710..632784	pentatricopeptide, putative, expressed
LOC_Os06g02130	Os.15324.1.S1_at	11/11	6	+	633263..639451	G-protein alpha subunit, putative, expressed
LOC_Os06g02144	Os.7894.1.S1_at	11/11	6	+	642711..645726	6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os06g02160	Os.35821.1.S1_at	7/11	6	+	646480..655657	AMP-binding enzyme family protein, expressed
LOC_Os06g02160	Os.33192.1.S1_at	1/11	6	+	646480..655657	AMP-binding enzyme family protein, expressed
LOC_Os06g02170	Os.16379.1.S1_at	11/11	6	+	656278..658069	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.21199.1.S1_s_at--971--557	1	Chr06:628944..628968 (25 bp)	GAAATGATACACATGCATCTTGAAC	LOC_Os06g02120
Os.21199.1.S1_s_at--1037--161	1	Chr06:628918..628942 (25 bp)	AGCTGTGAGTATCATGTCGGATGAA	LOC_Os06g02120
Os.21199.1.S1_s_at--856--689	1	Chr06:628910..628934 (25 bp)	GTATCATGTCGGATGAAACCGCTGT	LOC_Os06g02120
Os.21199.1.S1_s_at--637--555	2	Chr06:627970..627992 (23 bp)	GAAACCGCTGTTAAAACCGCTCGAG	NONE
Os.21199.1.S1_s_at--105--421	1	Chr06:628892..628916 (25 bp)	CCGCTGTTAAAACCGCTCGAGGGAG	LOC_Os06g02120
Os.21199.1.S1_s_at--866--403	1	Chr06:628875..628899 (25 bp)	CGAGGGAGGCAATATAAACCAGTAT	LOC_Os06g02120
Os.21199.1.S1_s_at--413--787	2	Chr01:3304179..3304199 (21 bp)	GGTTTGCTATTTTACTTGCGACATA	NONE
Os.21199.1.S1_s_at--384--363	1	Chr06:628806..628830 (25 bp)	CTTGCGACATATTTTTGGGCTAGTA	LOC_Os06g02120
Os.21199.1.S1_s_at--353--1021	1	Chr06:628793..628817 (25 bp)	TTTGGGCTAGTATCTTTCACTTTTT	LOC_Os06g02120
Os.21199.1.S1_s_at--809--367	1	Chr06:628780..628804 (25 bp)	CTTTCACTTTTTCATATGTAGGATC	LOC_Os06g02120
Os.21199.1.S1_s_at--434--1055	1	Chr06:628770..628794 (25 bp)	TTCATATGTAGGATCTTGCATCAAG	LOC_Os06g02120

Target Sequence

GAAATGATACACATGCATCTTGAACCAGCTGTGAGTATCATGTCGGATGAAACCGCTGTTAAAACCGCTCGAGGGAGGCA
ATATAAACCAGTATTAATAACCGAGTCTAGTTTTTTTTTTTTTTGGTTTGCTATTTTACTTGCGACATATTTTTGGGCTA
GTATCTTTCACTTTTTCATATGTAGGATCTTGCATCAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis