Browse Element(s) Details


Os.16379.1.S1_at

Description gb:AK063401.1
DB_XREF= gi:32973419
TID=Os.16379.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 2, BAC clone T32F12; putative DnaJ protein. (AC005314) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A03, full insert sequence.
FL= gb:AK063401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0217011/11expressed protein
LOC_Os03g077901/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02120Os.21199.1.S1_s_at11/116+628710..632784pentatricopeptide, putative, expressed
LOC_Os06g02130Os.15324.1.S1_at11/116+633263..639451G-protein alpha subunit, putative, expressed
LOC_Os06g02144Os.7894.1.S1_at11/116+642711..6457266-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os06g02160Os.35821.1.S1_at7/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02160Os.33192.1.S1_at1/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02170Os.16379.1.S1_at11/116+656278..658069expressed protein
LOC_Os06g02180Os.25614.1.S1_at11/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02180Os.57510.1.S1_x_at1/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02190OsAffx.15230.1.S1_at11/116+668561..668830hypothetical protein
LOC_Os06g02200Os.32653.1.S1_at11/116+675127..677879pentatricopeptide, putative, expressed
LOC_Os06g02210Os.3697.1.S1_at11/116+677899..681798Bark storage protein A precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16379.1.S1_at--1123--7411Chr06:657529..657553 (25 bp)
GTGTTCCTCAGTGGGTACAGTGACC
LOC_Os06g02170
Os.16379.1.S1_at--729--2131Chr06:657545..657569 (25 bp)
ACAGTGACCTTTATGGTGCCAGCTT
LOC_Os06g02170
Os.16379.1.S1_at--512--811Chr06:657591..657615 (25 bp)
AGGTTTCAGGAGCATCTTTACCCGC
LOC_Os06g02170
Os.16379.1.S1_at--596--7611Chr06:657664..657688 (25 bp)
GGGAAACTCTCGCATCAGATTCCGG
LOC_Os06g02170
Os.16379.1.S1_at--830--9591Chr06:657867..657891 (25 bp)
TCATAGGTCTGTGGTGGTCTGCCTA
LOC_Os06g02170
Os.16379.1.S1_at--1057--2992Chr06:657896..657920 (25 bp)
AATGATCCGGTGATGCATTTGCTTC
LOC_Os06g02170
Os.16379.1.S1_at--1052--10271Chr06:657913..657937 (25 bp)
TTTGCTTCACCTGCTTTGGATGTAT
LOC_Os06g02170
Os.16379.1.S1_at--1132--6271Chr06:657931..657955 (25 bp)
GATGTATGTTCCTCCATGCTTATGG
LOC_Os06g02170
Os.16379.1.S1_at--400--631Chr06:657946..657970 (25 bp)
ATGCTTATGGCTCCTCGTCAAGGTA
LOC_Os06g02170
Os.16379.1.S1_at--444--7671Chr06:657985..658009 (25 bp)
GGGATACTTGTACCTGATGCTGTGT
LOC_Os06g02170
Os.16379.1.S1_at--914--6331Chr06:658000..658024 (25 bp)
GATGCTGTGTTCAATTCCACCATCA
LOC_Os06g02170
Target Sequence 
GTGTTCCTCAGTGGGTACAGTGACCTTTATGGTGCCAGCTTCGGCTACCTGGAGAAGGTGGAAGGTTTCAGGAGCATCTT
TACCCGCCAGGATGTCGGTCGCGATGCNGTCCAGACCCTTCACAAGGGAGATATGGGGAAACTCTCGCATCAGATTCCGG
CGAGGAGAGCGCCCAAGGGTGAAGGCTCAACCCTGNCCTCCTACTGATTGCTGGGAGCTTGACCCTGCANTCATTGNCCT
TCTGAGTTGCTGNCNNNNNANNANNNNNNNNNGAAATAGCCGATGTGGTAACTTCGAGNAAGTATCTTAGCTGATAGGAT
TGTTCATACTGTAGAATTTGTCGGAGGTCATAGGTCTGTGGTGGTCTGCCTAGTGAAATGATCCGGTGATGCATTTGCTT
CACCTGCTTTGGATGTATGTTCCTCCATGCTTATGGCTCCTCGTCAAGGTAGAGATTTAGATAGCGGGATACTTGTACCT
GATGCTGTGTTCAATTCCACCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis