Browse Element(s) Details


Os.32653.1.S1_at

Description gb:AK103359.1
DB_XREF= gi:32988568
TID=Os.32653.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F4I10; vegetative storage protein. (AL035525) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126M02, full insert sequence.
FL= gb:AK103359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0220011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02160Os.35821.1.S1_at7/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02160Os.33192.1.S1_at1/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02170Os.16379.1.S1_at11/116+656278..658069expressed protein
LOC_Os06g02180Os.25614.1.S1_at11/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02180Os.57510.1.S1_x_at1/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02190OsAffx.15230.1.S1_at11/116+668561..668830hypothetical protein
LOC_Os06g02200Os.32653.1.S1_at11/116+675127..677879pentatricopeptide, putative, expressed
LOC_Os06g02210Os.3697.1.S1_at11/116+677899..681798Bark storage protein A precursor, putative, expressed
LOC_Os06g02220Os.3700.1.S1_at11/116+691775..694749Ripening-related protein, putative, expressed
LOC_Os06g02230Os.20309.1.S1_at11/116+695035..697257B3 DNA binding domain containing protein, expressed
LOC_Os06g02240Os.3702.1.S1_at10/116+698091..701212RNA recognition motif, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32653.1.S1_at--308--10711Chr06:677199..677223 (25 bp)
TTGCTTTTGGGCTCATTCGCACAGC
LOC_Os06g02200
Os.32653.1.S1_at--506--1431Chr06:677250..677274 (25 bp)
AGAACCTCCGAGTTTGTAATGACTG
LOC_Os06g02200
Os.32653.1.S1_at--289--6051Chr06:677328..677352 (25 bp)
GAGATATTCAGCGATTCCACCATTT
LOC_Os06g02200
Os.32653.1.S1_at--62--5651Chr06:677401..677425 (25 bp)
GACAGTTTGAATCTGCACCCGGAGA
LOC_Os06g02200
Os.32653.1.S1_at--1042--3271Chr06:677484..677619 (25 bp)
CAAAGTTCTTAAGGGCTGTGCAGCT
LOC_Os06g02200
Os.32653.1.S1_at--529--8691Chr06:677611..677635 (25 bp)
TGTGCAGCTGCCTCTTATATCAACA
LOC_Os06g02200
Os.32653.1.S1_at--1001--291Chr06:677673..677697 (25 bp)
ATAGCCACTTCACCTTTTCAGGAAA
LOC_Os06g02200
Os.32653.1.S1_at--1039--8171Chr06:677769..677793 (25 bp)
GGAACCTGTTCTTCATAGCAACCAT
LOC_Os06g02200
Os.32653.1.S1_at--1036--5691Chr06:677794..677818 (25 bp)
GACTTTCTCATGTCTTATCTTTGGC
LOC_Os06g02200
Os.32653.1.S1_at--184--1251Chr06:677822..677846 (25 bp)
AGATTAGATTCACATGTTCGGTCGA
LOC_Os06g02200
Os.32653.1.S1_at--1150--6691Chr06:677837..677861 (25 bp)
GTTCGGTCGAACTGTCAATAACTGA
LOC_Os06g02200
Target Sequence 
TTGCTTTTGGGCTCATTCGCACAGCCCCTGGCACAACAATCCAGATAAAGAAGAACCTCCGAGTTTGTAATGACTGCCAT
AATGCAACCAAGCTAATATCTTTAGTGACAGGACGGGAAATAATCATGAGAGATATTCAGCGATTCCACCATTTTAAGGA
TGGCAAATGCTCATGTGGAGACTACTGGTAGTGAAGTGTTGAGACAGTTTGAATCTGCACCCGGAGATGAGGGAGCTTCA
GAAAGATCAGAGTATCAGATCTGACAATTAGGTGAAACTAATTGGCAAAGTTCTTAAGGGCTGTGCAGCTGCCTCTTATA
TCAACACTAAATGGCTAAACTTGTGAAGTATCTGAAAATTGTTATAGCCACTTCACCTTTTCAGGAAACATACTGCAAAT
TCCAGTCAGTCATTGTAAAATTGAAATGCTTCTATTTACATTAAGATACTAGTGCATAGGGAACCTGTTCTTCATAGCAA
CCATGACTTTCTCATGTCTTATCTTTGGCCTGAGATTAGATTCACATGTTCGGTCGAACTGTCAATAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis