Browse Element(s) Details


Os.3702.1.S1_at

Description gb:AK099246.1
DB_XREF= gi:32984455
TID=Os.3702.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs D15336(C0474),C98053(C0474) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana DNA chromosome 4, ESSA I contig fragment No. 9; hypothetical protein. (Z97344) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116H22, full insert sequence.
FL= gb:AK061483.1 gb:AK099246.1 gb:AK074027.1 gb:AK104301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0224010/11RNA recognition motif, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02200Os.32653.1.S1_at11/116+675127..677879pentatricopeptide, putative, expressed
LOC_Os06g02210Os.3697.1.S1_at11/116+677899..681798Bark storage protein A precursor, putative, expressed
LOC_Os06g02220Os.3700.1.S1_at11/116+691775..694749Ripening-related protein, putative, expressed
LOC_Os06g02230Os.20309.1.S1_at11/116+695035..697257B3 DNA binding domain containing protein, expressed
LOC_Os06g02240Os.3702.1.S1_at10/116+698091..701212RNA recognition motif, putative, expressed
LOC_Os06g02250OsAffx.10368.1.S1_at11/116+715820..717015Myb-like DNA-binding domain containing protein
LOC_Os06g02250Os.57514.1.S1_x_at1/116+715820..717015Myb-like DNA-binding domain containing protein
LOC_Os06g02260Os.7946.1.S1_a_at11/116+724042..729614Callose synthase catalytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3702.1.S1_at--46--391Chr06:700673..700697 (25 bp)
ATCAGAAGTTCCAGGTGTCGGACAA
LOC_Os06g02240
Os.3702.1.S1_at--1110--2751Chr06:700696..700720 (25 bp)
AAGACCAAGTCTGCATTCGCTGCTG
LOC_Os06g02240
Os.3702.1.S1_at--457--8911Chr06:700733..700757 (25 bp)
TGAGCACTGCTGGATCTGCTATCAT
LOC_Os06g02240
Os.3702.1.S1_at--577--7651Chr06:700790..700814 (25 bp)
GGGTCACCAACGCATTCAACAAAGT
LOC_Os06g02240
Os.3702.1.S1_at--676--8331Chr06:700821..700845 (25 bp)
GGCTGCCACTGATGTTGGTACAATG
LOC_Os06g02240
Os.3702.1.S1_at--386--7671Chr06:700887..700911 (25 bp)
GGGTCCTTCTGGAGGGCACTCGTAC
LOC_Os06g02240
Os.3702.1.S1_at--662--3511Chr06:700943..700967 (25 bp)
CATGTGCCGCATTGTGTTGTATTGA
LOC_Os06g02240
Os.3702.1.S1_at--1098--5491Chr06:700989..701013 (25 bp)
GAACAGAAAAAGTCCCCTCCTGGCA
LOC_Os06g02240
Os.3702.1.S1_at--445--411Chr06:701028..701052 (25 bp)
ATCAGTGAACTTTTCGCATTGCAGG
LOC_Os06g02240
Os.3702.1.S1_at--214--6451Chr06:701088..701112 (25 bp)
GATCACAATGTATTCCGCTGGTTTA
LOC_Os06g02240
Os.3702.1.S1_at--185--9171NONE
TGCCGTTATTTAGCGTATCATTGAC
NONE
Target Sequence 
ATCAGAAGTTCCAGGTGTCGGACAAGACCAAGTCTGCATTCGCTGCTGCTGAACAGAAGGTGAGCACTGCTGGATCTGCT
ATCATGAAGAATAGGTATGTCTTCACCGGGGCTTCGTGGGTCACCAACGCATTCAACAAAGTTGCCAAGGCTGCCACTGA
TGTTGGTACAATGACAAAGGAGAAGATGGCAGCTGAAGACCAGCATAAGGGCTCGGGTCCTTCTGGAGGGCACTCGTACA
CACCCATCCAGTGATGACTCCACGCTCTCTCATGTGCCGCATTGTGTTGTATTGATGGATGTAAAACATAGATATAGAAC
AGAAAAAGTCCCCTCCTGGCATACCACATACTTCTATCAGTGAACTTTTCGCATTGCAGGAATTTTGTTTCCAGTAGAAT
AGGAAATATGATGGTGATCACAATGTATTCCGCTGGTTTATAAGGCGTATGTTCAAACTGTTTCTGGTTGTAGTAACTTG
CATGAACCTTGGCAAAAGTTGTGGAAAGCTCCTTTAATAATGTCANNNNNANNNNNNNNNAAAAAAAAAAAACACTGTCA
TGCCGTTATTTAGCGTATCATTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis