Browse Element(s) Details


OsAffx.10368.1.S1_at

Description tigr:9634.m00125
TID=OsAffx.10368.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0225011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02220Os.3700.1.S1_at11/116+691775..694749Ripening-related protein, putative, expressed
LOC_Os06g02230Os.20309.1.S1_at11/116+695035..697257B3 DNA binding domain containing protein, expressed
LOC_Os06g02240Os.3702.1.S1_at10/116+698091..701212RNA recognition motif, putative, expressed
LOC_Os06g02250OsAffx.10368.1.S1_at11/116+715820..717015Myb-like DNA-binding domain containing protein
LOC_Os06g02250Os.57514.1.S1_x_at1/116+715820..717015Myb-like DNA-binding domain containing protein
LOC_Os06g02260Os.7946.1.S1_a_at11/116+724042..729614Callose synthase catalytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10368.1.S1_at--626--7311Chr06:716482..716506 (25 bp)
GTGCTACCTGGCACAGACCTCATGA
LOC_Os06g02250
OsAffx.10368.1.S1_at--224--8511Chr06:716490..716514 (25 bp)
TGGCACAGACCTCATGACGTCCATC
LOC_Os06g02250
OsAffx.10368.1.S1_at--105--4171Chr06:716541..716565 (25 bp)
CGCCGGCATACTCGGACAGCAGCAG
LOC_Os06g02250
OsAffx.10368.1.S1_at--676--9431Chr06:716594..716618 (25 bp)
TCGGCCAGTACAACGGCAACTACGA
LOC_Os06g02250
OsAffx.10368.1.S1_at--735--6651Chr06:716631..716655 (25 bp)
GTTGACCAACGACAGCTGCACGCAG
LOC_Os06g02250
OsAffx.10368.1.S1_at--398--1851Chr06:716659..716683 (25 bp)
ACGCAGCCGGCCATGTCGAGCATGT
LOC_Os06g02250
OsAffx.10368.1.S1_at--793--2071Chr06:716702..716726 (25 bp)
ACAGAATTTCCAGCGGTATTTCCGG
LOC_Os06g02250
OsAffx.10368.1.S1_at--778--8411Chr06:716797..716821 (25 bp)
GGCCCGAGCGCAAGCAACATGACGA
LOC_Os06g02250
OsAffx.10368.1.S1_at--345--1311Chr06:716859..716883 (25 bp)
AGATGATCATCAGTGCAATACTAAC
LOC_Os06g02250
OsAffx.10368.1.S1_at--1093--1931Chr06:716903..716927 (25 bp)
ACGGCATGTCGTGTGAGCAGACGCC
LOC_Os06g02250
OsAffx.10368.1.S1_at--696--5771Chr06:716959..716983 (25 bp)
GACGACATCGACATGGAAGGTTGTT
LOC_Os06g02250
Target Sequence 
GTGCTACCTGGCACAGACCTCATGACGTCCATCCTCGGCGCCACCCTCGCCGCCAACTCCGCCGGCATACTCGGACAGCA
GCAGCAGCTCGCCGGCGTTGACCTCAGCCGCCTCGGCCAGTACAACGGCAACTACGACAACCTGCCGCCGTTGACCAACG
ACAGCTGCACGCAGCAGACGCAGCCGGCCATGTCGAGCATGTCCCCCGACAGCCTACTCAACAGAATTTCCAGCGGTATT
TCCGGGGACATGCTGGGCTCGCCGGAGCTTTGCCACGGCGGGGACGGGCTTAGCTCGCCGGAGCTCGGCCAGGGCGGCCC
GAGCGCAAGCAACATGACGACCTCACCGATGGCGCCGCCGCCGCCAATGGTAGCTGCAGATGATCATCAGTGCAATACTA
ACACCCCCAGCGGCGGCGGCGACGGCATGTCGTGTGAGCAGACGCCGGCGTCGAGCACGTTCGACGGGCTGAACCTGGAC
GACATCGACATGGAAGGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis