Browse Element(s) Details


Os.3700.1.S1_at

Description gb:AF458088.1
DB_XREF= gi:18087496
TID=Os.3700.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3700 (NCBI UniGene Cluster)
DEF=Oryza sativa methylthioadenosineS-adenosyl homocysteine nucleosidase mRNA, complete cds.
PROD=methylthioadenosineS-adenosyl homocysteinenucleosidase
FL= gb:AK104797.1 gb:AK104481.1 gb:AK066172.1 gb:AF458088.1 gb:AB110165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0222011/11Ripening-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02190OsAffx.15230.1.S1_at11/116+668561..668830hypothetical protein
LOC_Os06g02200Os.32653.1.S1_at11/116+675127..677879pentatricopeptide, putative, expressed
LOC_Os06g02210Os.3697.1.S1_at11/116+677899..681798Bark storage protein A precursor, putative, expressed
LOC_Os06g02220Os.3700.1.S1_at11/116+691775..694749Ripening-related protein, putative, expressed
LOC_Os06g02230Os.20309.1.S1_at11/116+695035..697257B3 DNA binding domain containing protein, expressed
LOC_Os06g02240Os.3702.1.S1_at10/116+698091..701212RNA recognition motif, putative, expressed
LOC_Os06g02250OsAffx.10368.1.S1_at11/116+715820..717015Myb-like DNA-binding domain containing protein
LOC_Os06g02250Os.57514.1.S1_x_at1/116+715820..717015Myb-like DNA-binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009116biological_processnucleoside metabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3700.1.S1_at--483--1671Chr06:694179..694203 (25 bp)
AGCCGCGGTGGCATATGTTGCTGAC
LOC_Os06g02220
Os.3700.1.S1_at--989--3491Chr06:694203..694227 (25 bp)
CATGTTTTCAACACCGGCAATCTTT
LOC_Os06g02220
Os.3700.1.S1_at--49--2491Chr06:694266..694290 (25 bp)
AACAGCCGAGGAGTTTCTGCAGAAC
LOC_Os06g02220
Os.3700.1.S1_at--230--5051Chr06:694284..694308 (25 bp)
GCAGAACCTGGTTGCTGTGACAGCA
LOC_Os06g02220
Os.3700.1.S1_at--50--5651Chr06:694302..694326 (25 bp)
GACAGCAGCTCTGGACAAGGCAGTT
LOC_Os06g02220
Os.3700.1.S1_at--890--3451Chr06:694347..694371 (25 bp)
CAGTGGGAAATGCATATCGGATCTT
LOC_Os06g02220
Os.3700.1.S1_at--771--8791Chr06:694394..694418 (25 bp)
TGTTCATCAAATCCAAGCTCTGCTG
LOC_Os06g02220
Os.3700.1.S1_at--2--1591Chr06:694409..694433 (25 bp)
AGCTCTGCTGCTTCAATGCACTATA
LOC_Os06g02220
Os.3700.1.S1_at--644--10371Chr06:694483..694507 (25 bp)
TTTTAGGTTCCCCTGAGGCCCTGAT
LOC_Os06g02220
Os.3700.1.S1_at--670--8651Chr06:694635..694659 (25 bp)
TGGGCGGTGGAGTTATTTTCTTAAT
LOC_Os06g02220
Os.3700.1.S1_at--46--1391Chr06:694669..694693 (25 bp)
AGACCATCTTCATTGTTTGCTCTAC
LOC_Os06g02220
Target Sequence 
AGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGG
AGAAACCAACAGCCGAGGAGTTTCTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTT
GATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTG
CTTCAATGCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGA
GGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCTGCAAA
ATGTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAA
TAGAGCATTGAGACCATCTTCATTGTTTGCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis