Browse Element(s) Details


Os.20309.1.S1_at

Description gb:AK106920.1
DB_XREF= gi:32992129
TID=Os.20309.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C74322(E30878),AU082328(E30878) correspond to a region of the predicted gene.~hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B04, full insert sequence.
FL= gb:AK106920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0223011/11B3 DNA binding domain containing protein, expressed
LOC_Os07g447801/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02200Os.32653.1.S1_at11/116+675127..677879pentatricopeptide, putative, expressed
LOC_Os06g02210Os.3697.1.S1_at11/116+677899..681798Bark storage protein A precursor, putative, expressed
LOC_Os06g02220Os.3700.1.S1_at11/116+691775..694749Ripening-related protein, putative, expressed
LOC_Os06g02230Os.20309.1.S1_at11/116+695035..697257B3 DNA binding domain containing protein, expressed
LOC_Os06g02240Os.3702.1.S1_at10/116+698091..701212RNA recognition motif, putative, expressed
LOC_Os06g02250OsAffx.10368.1.S1_at11/116+715820..717015Myb-like DNA-binding domain containing protein
LOC_Os06g02250Os.57514.1.S1_x_at1/116+715820..717015Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20309.1.S1_at--591--1311Chr06:696668..696688 (21 bp)
AGATGTGGATTCCACCTCGGTTCCA
LOC_Os06g02230
Os.20309.1.S1_at--358--1231Chr06:696889..696913 (25 bp)
AGTTCCAGGTGCAGATACTCCGCGG
LOC_Os06g02230
Os.20309.1.S1_at--875--3752Chr06:696969..696993 (25 bp)
CTCATCGTCGACTAGCTTAGCTATC
LOC_Os06g02230
Os.20309.1.S1_at--786--10151Chr06:696990..697014 (25 bp)
TATCGATCTAGCCACAGTACTAAAT
LOC_Os06g02230
Os.20309.1.S1_at--654--7011Chr06:697006..697030 (25 bp)
GTACTAAATCATCAAACTCCACTAT
LOC_Os06g02230
Os.20309.1.S1_at--652--9211Chr06:697023..697047 (25 bp)
TCCACTATTAATTCCACTGTCACTA
LOC_Os06g02230
Os.20309.1.S1_at--946--3331Chr06:697037..697061 (25 bp)
CACTGTCACTAGCTCGATCGGTAAT
LOC_Os06g02230
Os.20309.1.S1_at--513--3131Chr06:697097..697121 (25 bp)
AATTTATCCAACCAACTTATGTATG
LOC_Os06g02230
Os.20309.1.S1_at--477--751Chr06:697115..697139 (25 bp)
ATGTATGATGTACTGCAGCAGCTGC
LOC_Os06g02230
Os.20309.1.S1_at--227--6951Chr06:697159..697183 (25 bp)
GTAGTTTGCTACTATATCTGTTTGC
LOC_Os06g02230
Os.20309.1.S1_at--439--471Chr06:697174..697198 (25 bp)
ATCTGTTTGCAGGACGGATCCAGGA
LOC_Os06g02230
Target Sequence 
AGATGTGGATTCCACCTCGGTTCCAGCATCGGCTGGCGGAGCNGNAGGCGCGCACGGCGGCGGTGCTCCANTCCGGCGGC
AAGTCGTNGGGCGACGANCTANTNCGGCCACCTCAAGATGAAGAANNTGGACGCGGGATNGTCGNAGTTCGCGGTNGANA
ACCGGCTCCTGGTCGGGGACGCCTGCGTCTTCGAGCTCGTCGCCATGGGCGCCGCCGGAGGTCTGGAGTTCCAGGTGCAG
ATACTCCGCGGCGGCCTGCCGGCGGAGGTCGTCACCTCCAAGGGCCTCACCTCCGACCAACCCATCCTCATCGTCGACTA
GCTTAGCTATCGATCTAGCCACAGTACTAAATCATCAAACTCCACTATTAATTCCACTGTCACTAGCTCGATCGGTAATT
AAAGGCAAGGAGCTTTAATTTGGTGTCAAGCAAAAATTTATCCAACCAACTTATGTATGATGTACTGCAGCAGCTGCAAT
GGCTACTGTAGGGATTGTAGTTTGCTACTATATCTGTTTGCAGGACGGATCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis