Browse Element(s) Details

Os.35821.1.S1_at

Description

gb:AK065637.1
DB_XREF= gi:32975655
TID=Os.35821.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.35821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Brevibacillus brevis tyrocidine synthetase 2 (AF004835) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031C15, full insert sequence.
FL= gb:AK065637.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02160	7/11	AMP-binding enzyme family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02100	Os.49022.1.S1_at	11/11	6	+	622552..625087	F-box domain containing protein, expressed
LOC_Os06g02110	Os.34056.1.S1_at	11/11	6	+	625262..627762	F-box domain containing protein, expressed
LOC_Os06g02110	Os.55536.1.S1_at	1/11	6	+	625262..627762	F-box domain containing protein, expressed
LOC_Os06g02120	Os.21199.1.S1_s_at	11/11	6	+	628710..632784	pentatricopeptide, putative, expressed
LOC_Os06g02130	Os.15324.1.S1_at	11/11	6	+	633263..639451	G-protein alpha subunit, putative, expressed
LOC_Os06g02144	Os.7894.1.S1_at	11/11	6	+	642711..645726	6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os06g02160	Os.35821.1.S1_at	7/11	6	+	646480..655657	AMP-binding enzyme family protein, expressed
LOC_Os06g02160	Os.33192.1.S1_at	1/11	6	+	646480..655657	AMP-binding enzyme family protein, expressed
LOC_Os06g02170	Os.16379.1.S1_at	11/11	6	+	656278..658069	expressed protein
LOC_Os06g02180	Os.25614.1.S1_at	11/11	6	+	659149..664392	cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02180	Os.57510.1.S1_x_at	1/11	6	+	659149..664392	cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02190	OsAffx.15230.1.S1_at	11/11	6	+	668561..668830	hypothetical protein
LOC_Os06g02200	Os.32653.1.S1_at	11/11	6	+	675127..677879	pentatricopeptide, putative, expressed
LOC_Os06g02210	Os.3697.1.S1_at	11/11	6	+	677899..681798	Bark storage protein A precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016208	molecular_function	AMP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.35821.1.S1_at--311--997	1	Chr06:655147..655171 (25 bp)	TACCGAGAGCTCAGCTAGTCAGCAT	LOC_Os06g02160
Os.35821.1.S1_at--570--211	1	Chr06:655356..655380 (25 bp)	ACAGGACGACGTATGGACTCCGGTA	LOC_Os06g02160
Os.35821.1.S1_at--43--573	1	Chr06:655371..655395 (25 bp)	GACTCCGGTAACTAGGCACAAGGTT	LOC_Os06g02160
Os.35821.1.S1_at--150--221	1	Chr06:655419..655443 (25 bp)	ACAACATGAGTGTTTTCCCCATATG	LOC_Os06g02160
Os.35821.1.S1_at--631--929	1	Chr06:655434..655458 (25 bp)	TCCCCATATGTAAAACCACTTCCGT	LOC_Os06g02160
Os.35821.1.S1_at--528--1065	1	Chr06:655453..655477 (25 bp)	TTCCGTTACTCTGCAGGGCTATCAA	LOC_Os06g02160
Os.35821.1.S1_at--672--167	1	Chr06:655480..655504 (25 bp)	AGCCGCTGCTTACTTCAGTTATGCA	LOC_Os06g02160
Os.35821.1.S1_at--350--19	1	Chr06:655691..655715 (25 bp)	ATTTCTGCTTTTCGAAGGAGCCCTT	NONE
Os.35821.1.S1_at--752--543	1	NONE	GAACCTCTGCTGTATTGGTGGCGAC	NONE
Os.35821.1.S1_at--483--755	1	NONE	GTGGCGACTCAGATGTTGTGCAGTA	NONE
Os.35821.1.S1_at--58--921	1	Chr06:655795..655819 (25 bp)	TGCCAATTCGTCCTTGTGATTCAGA	NONE

Target Sequence

TACCGAGAGCTCAGCTAGTCAGCATCNTNTNNANNNNNCTNTNNNNANNNNNCNANAANNNNNNNNNTNCNGAAGCTGCT
GGTCTTCCTGCANATTAGCAACAGTGAAGAAGTGCAAAATGAAACAGGACGACGTATGGACTCCGGTAACTAGGCACAAG
GTTTTGAACGTCAAAAATTCAATTTCACAACATGAGTGTTTTCCCCATATGTAAAACCACTTCCGTTACTCTGCAGGGCT
ATCAAGCAGCCGCTGCTTACTTCAGTTATGCATTCTTAAGGCTGTGATTTGACCAAACAAACTACACACNCAACTGGGGT
CTTGTTCAGCTTTGCCTTACCCGGGCAGCTTGGTTTAGGGATGCAAATGGCCCGTATTAATTAAGGCCTGTTGGGTTTAG
AGGAATTTCGCGGGAATTTTGAAGGAATTGAATTGTTTGCTGTGTAAATCATGTAAAAATTTCTGCTTTTCGAAGGAGCC
CTTATCGGGGGAATCCTTGCTGCGCGGGACCGAAGTCACCGAACCTCTGCTGTATTGGTGGCGACTCAGATGTTGTGCAG
TATGCCAATTCGTCCTTGTGATTCAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis