Browse Element(s) Details

Os.38638.2.S1_at

Description

gb:AK121791.1
DB_XREF= gi:37991414
TID=Os.38638.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsENOD93a mRNA for early nodulin, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095D10, full insert sequence.
FL= gb:AK121791.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04950	11/11	Early nodulin 93 ENOD93 protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04900	OsAffx.15266.1.S1_x_at	11/11	6	+	2154078..2155717	Hexose carrier protein HEX6, putative
LOC_Os06g04910	Os.16783.1.S1_at	10/11	6	+	2156496..2159577	hydrolase, NUDIX family protein, expressed
LOC_Os06g04920	Os.10583.1.S1_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04920	Os.10583.1.S1_s_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04930	Os.3571.2.S1_s_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	OsAffx.15267.1.S1_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.3571.1.S1_at	2/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.55511.1.S1_at	1/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04940	Os.37255.1.A1_at	10/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04940	Os.38638.3.S1_x_at	3/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04950	Os.38638.2.S1_at	11/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	OsAffx.27459.4.S1_at	6/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	Os.38638.3.S1_x_at	4/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04960	OsAffx.12420.1.S1_at	2/11	6	+	2183984..2187338	hypothetical protein
LOC_Os06g04970	Os.17050.1.A1_at	10/11	6	+	2188914..2193837	expressed protein
LOC_Os06g04980	Os.3577.1.S1_x_at	5/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	Os.3577.2.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	OsAffx.4692.1.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04990	Os.38638.1.S1_at	11/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.38638.3.S1_x_at	7/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.37255.1.A1_at	1/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g05000	OsAffx.27459.2.S1_s_at	11/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	Os.38638.3.S1_x_at	2/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	OsAffx.27459.4.S1_at	1/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.38638.2.S1_at--1027--877	2	Chr06:2180037..2180061 (25 bp)	TGTTTCTGCTAGACTGCTACTGCAA	LOC_Os06g04950
Os.38638.2.S1_at--678--1003	1	Chr06:2180028..2180052 (25 bp)	TAGACTGCTACTGCAAGTGTTGGTA	LOC_Os06g04950
Os.38638.2.S1_at--799--111	1	Chr06:2180013..2180037 (25 bp)	AGTGTTGGTAGCTAGATCCTCTCTC	LOC_Os06g04950
Os.38638.2.S1_at--606--859	1	Chr06:2180008..2180032 (25 bp)	TGGTAGCTAGATCCTCTCTCTGCTT	LOC_Os06g04950
Os.38638.2.S1_at--167--1005	1	Chr06:2180001..2180025 (25 bp)	TAGATCCTCTCTCTGCTTGTCGTTG	LOC_Os06g04950
Os.38638.2.S1_at--978--377	1	Chr06:2179991..2180015 (25 bp)	CTCTGCTTGTCGTTGTTGTTGTAGA	LOC_Os06g04950
Os.38638.2.S1_at--187--265	1	Chr06:2179368..2179392 (25 bp)	AAGCCTGGATAAACCGCTACTACTA	LOC_Os06g04950
Os.38638.2.S1_at--847--851	1	Chr06:2179363..2179387 (25 bp)	TGGATAAACCGCTACTACTACAATA	LOC_Os06g04950
Os.38638.2.S1_at--768--261	1	Chr06:2179357..2179381 (25 bp)	AACCGCTACTACTACAATATGGCTG	LOC_Os06g04950
Os.38638.2.S1_at--986--833	1	Chr06:2179337..2179361 (25 bp)	GGCTGTGCTTGCTGTGTAATGGTTC	LOC_Os06g04950
Os.38638.2.S1_at--327--733	1	Chr06:2179333..2179357 (25 bp)	GTGCTTGCTGTGTAATGGTTCTATA	LOC_Os06g04950

Target Sequence

TGTTTCTGCTAGACTGCTACTGCAAGTGTTGGTAGCTAGATCCTCTCTCTGCTTGTCGTTGTTGTTGTAGAAGAAGAAGC
TGATGTCGACGGTGACTCGTGCCTACCTCGACCAGAAGCTCGCCCTCGCAAAACGCTGCTCCAGAGAGGCGACGCTCGCC
GGAGCCAAGGCGGCGGCGGTGGCGACGGTGGCATCCGCCGTCCCGACGCTGGCGAGCGTGAGGATGCTGCCGTGGGCGAA
GGCCAACATNAACCCGACGGGACAGGCGCTGATCATCTGCACGGCGGCCGGGATGGNATACTTCGTCGCCGCCGACAAGA
AGATCCTCTCGCTGGCGAGGAGGCACTCCTTCGAGAACGCACCTGAACACCTCAAGAACACCTCCTTCCAGGGCACCGGC
CACCCTCACCCTGCCTTCTTCAGGCCATGAGGAACACTGAACTTCACAGTGACTGATGGAAGCCTGGATAAACCGCTACT
ACTACAATATGGCTGTGCTTGCTGTGTAATGGTTCTATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis