Browse Element(s) Details

Os.3577.1.S1_x_at

Description

gb:AK119470.1
DB_XREF= gi:37989093
TID=Os.3577.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-A09, full insert sequence.
FL= gb:AK119470.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04710	9/11	expressed protein
LOC_Os06g04690	9/11	F-box domain containing protein, expressed
LOC_Os06g04980	5/11	F-box domain containing protein
LOC_Os10g22590	2/11	Pollen proteins Ole e I family protein, expressed
LOC_Os10g24370	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04660	Os.11678.1.S1_at	11/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04660	Os.11678.2.S1_at	9/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_x_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04680	Os.49667.1.S1_at	10/11	6	+	2038752..2040428	expressed protein
LOC_Os06g04690	Os.3577.2.S1_at	11/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04690	Os.3577.1.S1_x_at	9/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04699	Os.7474.1.S1_at	11/11	6	+	2049319..2050708	expressed protein
LOC_Os06g04710	Os.3577.2.S1_at	11/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04710	Os.3577.1.S1_x_at	9/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04710	OsAffx.28618.1.S1_at	1/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04722	OsAffx.4722.1.S1_at	11/11	6	+	2061556..2062050	hypothetical protein
LOC_Os06g04734	Os.7474.1.S1_at	4/11	6	+	2063259..2064311	hypothetical protein
LOC_Os06g04750	NA	NA	6	+	2071406..2071852	hypothetical protein
LOC_Os06g04760	NA	NA	6	+	2073051..2073482	hypothetical protein
LOC_Os06g04770	Os.35344.18.S1_x_at	11/11	6	+	2076565..2082612	transposon protein, putative, Mutator sub-class
LOC_Os06g04770	Os.35344.3.S1_x_at	9/11	6	+	2076565..2082612	transposon protein, putative, Mutator sub-class
LOC_Os06g04770	OsAffx.22940.5.S1_x_at	3/11	6	+	2076565..2082612	transposon protein, putative, Mutator sub-class
LOC_Os06g04780	Os.26713.1.S1_at	11/11	6	+	2083593..2086278	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3577.1.S1_x_at--339--541	3	Chr06:2196487..2196511 (25 bp)	GAAGCTCCTAATGTCTCCATTTTTG	LOC_Os06g04980
Os.3577.1.S1_x_at--955--779	2	Chr06:2057348..2057372 (25 bp)	GGTCCGCTCTGGTTATGTTTATCAT	LOC_Os06g04710
Os.3577.1.S1_x_at--450--681	3	Chr06:2196592..2196616 (25 bp)	GTTTATCATGCTCGTGCTGAACTTC	LOC_Os06g04980
Os.3577.1.S1_x_at--667--233	3	Chr06:2196750..2196770 (21 bp)	AAAGAGACGGCCTTTGCACCGAAGC	LOC_Os06g04980
Os.3577.1.S1_x_at--329--793	3	Chr06:2196823..2196842 (20 bp)	GGATTTTTCCCAGCCTATGACTATT	LOC_Os06g04980
Os.3577.1.S1_x_at--948--67	2	Chr06:2057074..2057098 (25 bp)	ATGACTATTTATCCCTGGCTTCTTA	LOC_Os06g04710
Os.3577.1.S1_x_at--1148--17	2	Chr06:2057048..2057072 (25 bp)	ATTTATGCTGCACCTTCTCTGGAGA	LOC_Os06g04710
Os.3577.1.S1_x_at--571--737	2	Chr06:2056822..2056846 (25 bp)	GTGACGGTTACATCATTCATCTCTG	LOC_Os06g04710
Os.3577.1.S1_x_at--847--589	4	Chr06:2197126..2197149 (24 bp)	GAGCTGACATGCCATATCCTTGAGT	LOC_Os06g04980
Os.3577.1.S1_x_at--498--1019	1	Chr10:11394900..11394924 (25 bp)	TATATGTATGTTCGTCTGCAGCTGA	LOC_Os10g22590
Os.3577.1.S1_x_at--816--935	1	Chr10:11394950..11394974 (25 bp)	TCGACATGTTGTGCTTTCTATCAGG	LOC_Os10g22590

Target Sequence

GAAGCTCCTAATGTCTCCATTTTTGCATTTCAAGGGGACAAAACGGAACTGAAACTTGGAGAAACTTTGCAAATAAAGAG
CCTATGCATGGTCCGCTCTGGTTATGTTTATCATGCTCGTGCTGAACTTCCATCCATCATGCCAAATCTTGAATCTCTTG
CCATAAAGTCACGCAAAGAGACGGCCTTTGCACCGAAGCTGTGTAGCAAATTCCTCTGCCTCAGGCACTTGAGCATTGGC
CTTATTGGATTTTTCCCAGCCTATGACTATTTATCCCTGGCTTCTTATATTTATGCTGCACCTTCTCTGGAGACTTTTGA
CTTGAATGTAATGCAGCGGAACGTGCAGAGTGTTTCAATTTTTGCACATCCTGCAGATCTGAGATCAATACGAGAAGAGA
AGCATCACAACCTTAAGAGTGTGACGGTTACATCATTCATCTCTGTAAAGAGCTTGGTTGAGCTGACATGCCATATCCTT
GAGTATGTTATATGTATGTTCGTCTGCAGCTGAACTGCAAAACTCATCAGTTACTAAATCGACATGTTGTGCTTTCTATC
AGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis