Browse Element(s) Details


OsAffx.28618.1.S1_at

Description tigr:9635.m02629
TID=OsAffx.28618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2725011/11hypothetical protein
LOC_Os12g016201/11expressed protein
LOC_Os06g047101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27210NANA7+15812018..15814693hypothetical protein
LOC_Os07g27220OsAffx.30486.1.S1_at1/117+15815188..15817679hypothetical protein
LOC_Os07g27230OsAffx.22699.1.S1_x_at2/117+15818057..15826087retrotransposon protein, putative, unclassified
LOC_Os07g27230OsAffx.30486.1.S1_at1/117+15818057..15826087retrotransposon protein, putative, unclassified
LOC_Os07g27240OsAffx.22348.1.S1_at11/117+15828979..15829500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27250OsAffx.28618.1.S1_at11/117+15839610..15840274hypothetical protein
LOC_Os07g27250OsAffx.21595.1.S1_x_at1/117+15839610..15840274hypothetical protein
LOC_Os07g27260OsAffx.28619.1.S1_at11/117+15845706..15846242hypothetical protein
LOC_Os07g27269NANA7+15847601..15847922NA
LOC_Os07g27280OsAffx.5458.1.S1_at11/117+15850535..15852833hypothetical protein
LOC_Os07g27290OsAffx.10222.1.S1_x_at2/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.45902.1.A1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290Os.51841.1.S1_x_at1/117+15858552..15861277hypothetical protein
LOC_Os07g27290OsAffx.22442.1.S1_x_at1/117+15858552..15861277hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28618.1.S1_at--1066--2191Chr07:15840203..15840227 (25 bp)
ACAACAGATCGACACACAATACACA
LOC_Os07g27250
OsAffx.28618.1.S1_at--444--6431Chr07:15840079..15840103 (25 bp)
GATCTTGCTGAGTTTGGATTCAAGG
LOC_Os07g27250
OsAffx.28618.1.S1_at--765--6551Chr07:15840063..15840087 (25 bp)
GATTCAAGGAAGACTACCCCATTGT
LOC_Os07g27250
OsAffx.28618.1.S1_at--830--9731Chr07:15840060..15840084 (25 bp)
TCAAGGAAGACTACCCCATTGTCGA
LOC_Os07g27250
OsAffx.28618.1.S1_at--288--8691Chr07:15840041..15840065 (25 bp)
TGTCGACTACGTGATAGTATTTCAG
LOC_Os07g27250
OsAffx.28618.1.S1_at--139--2031Chr07:15840036..15840060 (25 bp)
ACTACGTGATAGTATTTCAGGCAGT
LOC_Os07g27250
OsAffx.28618.1.S1_at--553--1151Chr07:15839686..15840033 (25 bp)
AGTCGACAACGGTTTATCTCATGCA
LOC_Os07g27250
OsAffx.28618.1.S1_at--290--5611Chr07:15839682..15840029 (25 bp)
GACAACGGTTTATCTCATGCAAGCA
LOC_Os07g27250
OsAffx.28618.1.S1_at--394--3971Chr07:15839677..15839700 (24 bp)
CGGTTTATCTCATGCAAGCAACCAA
LOC_Os07g27250
OsAffx.28618.1.S1_at--705--9013Chr07:15839665..15839689 (25 bp)
TGCAAGCAACCAAACACATGCATGT
LOC_Os07g27250
OsAffx.28618.1.S1_at--358--1712Chr12:376402..376470 (25 bp)
ACCAAACACATGCATGTGTATCCCC
LOC_Os12g01620
Target Sequence 
ACAACAGATCGACACACAATACACACGCCAAGACAAGCCGCCGGTTATCGACATCAGAGATAAGCCTAGACAAACCCAAT
ATGGTGTCTGTGGAGGCCAACAAGAGGGATCTAGCGCTATATCTGATCTTGCTGAGTTTGGATTCAAGGAAGACTACCCC
ATTGTCGACTACGTGATAGTATTTCAGGCAGTCAAGTCGACAACGGTTTATCTCATGCAAGCAACCAAACACATGCATGT
GTATCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis