Browse Element(s) Details


OsAffx.22348.1.S1_at

Description gb:NM_187179.1
DB_XREF= gi:34901443
TID=OsAffx.22348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0075N02.32 (OSJNBa0075N02.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2724011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27200OsAffx.22699.1.S1_x_at2/117+15800734..15810356retrotransposon protein, putative, unclassified
LOC_Os07g27200OsAffx.30486.1.S1_at1/117+15800734..15810356retrotransposon protein, putative, unclassified
LOC_Os07g27200OsAffx.2494.1.S1_at1/117+15800734..15810356retrotransposon protein, putative, unclassified
LOC_Os07g27200OsAffx.16451.1.A1_x_at1/117+15800734..15810356retrotransposon protein, putative, unclassified
LOC_Os07g27210NANA7+15812018..15814693hypothetical protein
LOC_Os07g27220OsAffx.30486.1.S1_at1/117+15815188..15817679hypothetical protein
LOC_Os07g27230OsAffx.22699.1.S1_x_at2/117+15818057..15826087retrotransposon protein, putative, unclassified
LOC_Os07g27230OsAffx.30486.1.S1_at1/117+15818057..15826087retrotransposon protein, putative, unclassified
LOC_Os07g27240OsAffx.22348.1.S1_at11/117+15828979..15829500retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27250OsAffx.28618.1.S1_at11/117+15839610..15840274hypothetical protein
LOC_Os07g27250OsAffx.21595.1.S1_x_at1/117+15839610..15840274hypothetical protein
LOC_Os07g27260OsAffx.28619.1.S1_at11/117+15845706..15846242hypothetical protein
LOC_Os07g27269NANA7+15847601..15847922NA
LOC_Os07g27280OsAffx.5458.1.S1_at11/117+15850535..15852833hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22348.1.S1_at--416--8511Chr07:15829034..15829058 (25 bp)
TGGGAGCGGCGTTCGGGCGGCGGTT
LOC_Os07g27240
OsAffx.22348.1.S1_at--1024--2291Chr07:15829067..15829091 (25 bp)
AAATGTGGTGGCCAAGCTTGATCTC
LOC_Os07g27240
OsAffx.22348.1.S1_at--1062--4371Chr07:15829078..15829102 (25 bp)
CCAAGCTTGATCTCGCGGCGGCGAA
LOC_Os07g27240
OsAffx.22348.1.S1_at--721--4151Chr07:15829118..15829142 (25 bp)
CGCGCGACGCGACGATGGCTAGGAT
LOC_Os07g27240
OsAffx.22348.1.S1_at--386--7531Chr07:15829154..15829178 (25 bp)
GTGGCTGGAGATCACCAGCAACGGC
LOC_Os07g27240
OsAffx.22348.1.S1_at--64--1092Chr07:15829210..15829234 (25 bp)
AGGGCGCGATGGGAGCTCGGGCGAA
LOC_Os07g27240
OsAffx.22348.1.S1_at--616--6171Chr07:15829249..15829273 (25 bp)
GAGGATGGCACAGGGAAGCTTTTTA
LOC_Os07g27240
OsAffx.22348.1.S1_at--15--2711Chr07:15829264..15829288 (25 bp)
AAGCTTTTTATAGCGCTCGGGAGTC
LOC_Os07g27240
OsAffx.22348.1.S1_at--154--10171Chr07:15829272..15829296 (25 bp)
TATAGCGCTCGGGAGTCACGGGCAT
LOC_Os07g27240
OsAffx.22348.1.S1_at--875--4691Chr07:15829351..15829375 (25 bp)
GCGGCGGCGATTAGGTGCCGGATTT
LOC_Os07g27240
OsAffx.22348.1.S1_at--718--1911Chr07:15829416..15829440 (25 bp)
ACGTGGCCCCGCGATGAGGGTGAGC
LOC_Os07g27240
Target Sequence 
TGGGAGCGGCGTTCGGGCGGCGGTTTGGGGAGGAAATGTGGTGGCCAAGCTTGATCTCGCGGCGGCGAAGCCGGTGGTGG
TGGCCGCGCGACGCGACGATGGCTAGGATGGCGGCGAGTGGTGGCTGGAGATCACCAGCAACGGCGGAGAGAGAGGAGCG
ACACGGGGAGCTCGAGAGGGCGCGATGGGAGCTCGGGCGAATGGGGAAAAAGAGAGAGGATGGCACAGGGAAGCTTTTTA
TAGCGCTCGGGAGTCACGGGCATGGCCGGGGAAGGGCGGCAACAACCGGCGAGGAAGTGGGGCGACATCGAGGGGTGGCG
GCGGCGATTAGGTGCCGGATTTTGGGGGCAAGTGGGGGAAGGAGTGTGGAGGAGGTGGGGCGACGTGGCCCCGCGATGAG
GGTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis