Browse Element(s) Details


OsAffx.4722.1.S1_at

Description tigr:9634.m00390
TID=OsAffx.4722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0472211/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04670OsAffx.27457.1.S1_at11/116+2035772..2036779CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04670OsAffx.27457.1.S1_x_at11/116+2035772..2036779CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04680Os.49667.1.S1_at10/116+2038752..2040428expressed protein
LOC_Os06g04690Os.3577.2.S1_at11/116+2042458..2047358F-box domain containing protein, expressed
LOC_Os06g04690Os.3577.1.S1_x_at9/116+2042458..2047358F-box domain containing protein, expressed
LOC_Os06g04699Os.7474.1.S1_at11/116+2049319..2050708expressed protein
LOC_Os06g04710Os.3577.2.S1_at11/116+2056222..2061224expressed protein
LOC_Os06g04710Os.3577.1.S1_x_at9/116+2056222..2061224expressed protein
LOC_Os06g04710OsAffx.28618.1.S1_at1/116+2056222..2061224expressed protein
LOC_Os06g04722OsAffx.4722.1.S1_at11/116+2061556..2062050hypothetical protein
LOC_Os06g04734Os.7474.1.S1_at4/116+2063259..2064311hypothetical protein
LOC_Os06g04750NANA6+2071406..2071852hypothetical protein
LOC_Os06g04760NANA6+2073051..2073482hypothetical protein
LOC_Os06g04770Os.35344.18.S1_x_at11/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04770Os.35344.3.S1_x_at9/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04770OsAffx.22940.5.S1_x_at3/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04780Os.26713.1.S1_at11/116+2083593..2086278expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4722.1.S1_at--297--8112Chr06:2061974..2061998 (25 bp)
GGACTCGGCGACGAAAGCCTCGACT
LOC_Os06g04722
OsAffx.4722.1.S1_at--602--9452Chr06:2061970..2061994 (25 bp)
TCGGCGACGAAAGCCTCGACTTGGG
LOC_Os06g04722
OsAffx.4722.1.S1_at--484--4692Chr06:2061935..2061959 (25 bp)
GCGGCAATGAGGTGGCCTTGGCCTT
LOC_Os06g04722
OsAffx.4722.1.S1_at--397--10812Chr06:2061918..2061942 (25 bp)
TTGGCCTTGGGTACCGGCATGGGTG
LOC_Os06g04722
OsAffx.4722.1.S1_at--118--7712Chr06:2061854..2061878 (25 bp)
GGGTGGCGGGTGTCTTCTTGAAGGA
LOC_Os06g04722
OsAffx.4722.1.S1_at--154--9552Chr06:2061842..2061866 (25 bp)
TCTTCTTGAAGGAGACTGACGGCGT
LOC_Os06g04722
OsAffx.4722.1.S1_at--393--8372Chr06:2061822..2061846 (25 bp)
GGCGTGGTGGTCAGCATCGTCGTAG
LOC_Os06g04722
OsAffx.4722.1.S1_at--252--7212Chr06:2061718..2061742 (25 bp)
GTCGTCGACGAACCGCCGACAATGG
LOC_Os06g04722
OsAffx.4722.1.S1_at--1007--5432Chr06:2061709..2061733 (25 bp)
GAACCGCCGACAATGGAGCTCCTCA
LOC_Os06g04722
OsAffx.4722.1.S1_at--1041--3952Chr06:2061671..2061695 (25 bp)
CGGAGAGTCCGTGGCTGTCGCGAGG
LOC_Os06g04722
OsAffx.4722.1.S1_at--956--6112Chr06:2061650..2061674 (25 bp)
GAGGGCGACGCTCTGGTGGTCGGCT
LOC_Os06g04722
Target Sequence 
GGACTCGGCGACGAAAGCCTCGACTTGGGGGAGACGAGGGCGGCAATGAGGTGGCCTTGGCCTTGGGTACCGGCATGGGT
GCCTTGGTGGACTTGGTGGGTGGCGCGGTGACCGGAGCCGGGGTGGCGGGTGTCTTCTTGAAGGAGACTGACGGCGTGGT
GGTCAGCATCGTCGTAGGGGCGAGTGGAGATGGCGGCATCGATGTCGAGAACGACCTCCTCCTCCGCTCCAACCCCGCCA
TCTCTGCCCCTCCACCGTCGTCGACGAACCGCCGACAATGGAGCTCCTCACCAAGGACGACAGCGGAGAGTCCGTGGCTG
TCGCGAGGGCGACGCTCTGGTGGTCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis