Browse Element(s) Details

OsAffx.27459.2.S1_s_at

Description

tigr:9634.m00419
TID=OsAffx.27459.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Early nodulin 93 ENOD93 protein, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05000	11/11	Early nodulin 93 ENOD93 protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04950	Os.38638.2.S1_at	11/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	OsAffx.27459.4.S1_at	6/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	Os.38638.3.S1_x_at	4/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04960	OsAffx.12420.1.S1_at	2/11	6	+	2183984..2187338	hypothetical protein
LOC_Os06g04970	Os.17050.1.A1_at	10/11	6	+	2188914..2193837	expressed protein
LOC_Os06g04980	Os.3577.1.S1_x_at	5/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	Os.3577.2.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	OsAffx.4692.1.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04990	Os.38638.1.S1_at	11/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.38638.3.S1_x_at	7/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.37255.1.A1_at	1/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g05000	OsAffx.27459.2.S1_s_at	11/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	Os.38638.3.S1_x_at	2/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	OsAffx.27459.4.S1_at	1/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_x_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	Os.38638.3.S1_x_at	5/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.4.S1_s_at	11/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.3.S1_x_at	4/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05030	Os.31312.5.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05030	Os.31312.2.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05040	NA	NA	6	+	2221262..2227416	retrotransposon protein, putative, unclassified
LOC_Os06g05050	NA	NA	6	+	2228103..2232268	Protein kinase domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27459.2.S1_s_at--977--377	1	Chr06:2205429..2205453 (25 bp)	CTCTGCTTCTCGTTGTTCTTGGTTG	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--67--907	1	Chr06:2205426..2205450 (25 bp)	TGCTTCTCGTTGTTCTTGGTTGGTT	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--899--735	1	Chr06:2205364..2205388 (25 bp)	GTGACTCGTGCCTACTTGGATCAGA	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--612--571	1	Chr06:2205362..2205386 (25 bp)	GACTCGTGCCTACTTGGATCAGAAG	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--429--941	1	Chr06:2205359..2205383 (25 bp)	TCGTGCCTACTTGGATCAGAAGCTC	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--138--445	1	Chr06:2205355..2205379 (25 bp)	GCCTACTTGGATCAGAAGCTCGCAC	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--1050--987	1	Chr06:2205352..2205376 (25 bp)	TACTTGGATCAGAAGCTCGCACTCG	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--217--403	1	Chr06:2204928..2204952 (25 bp)	CGTTCGAGGGCGCACCGGAGCACCT	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--1062--475	1	Chr06:2204794..2204818 (25 bp)	GCTGCTGAGTTCATGCGTAATGGTT	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--1056--385	1	Chr06:2204790..2204814 (25 bp)	CTGAGTTCATGCGTAATGGTTCTAT	LOC_Os06g05000
OsAffx.27459.2.S1_s_at--57--607	1	Chr06:2204788..2204812 (25 bp)	GAGTTCATGCGTAATGGTTCTATAA	LOC_Os06g05000

Target Sequence

CTCTGCTTCTCGTTGTTCTTGGTTGGTTGTTGTTGTAGAAGAAGAAGAAGAAGAAGATGTCGACGGTGACTCGTGCCTAC
TTGGATCAGAAGCTCGCACTCGCCAAGCGCTGCTCCAGAGAGGCGACGCTCGCCGGAGCCAAGGCTGCGGCGGTGGCGAC
GGTGGCATCCGCCGTCCCAACGTTGGCGAGCGTGAGGATGCTGCCATGGGCGAAGGCCAACATCAACCCGACGGGTCAGG
CGCTGATCATCTGCACGGCGGCTGGGATGGCATACTTCGTCGCCGCCGACAAGAAGATCCTCTCGCTGGCGAGGAAGCAC
TCGTTCGAGGGCGCACCGGAGCACCTCAAGAACACCTCCTTCCAGGGCACCGGCCGCCCTCACCCAGCCTTCTTCAGGCC
ATGAGGAACACTGAACTTTCACAGTGACTGATGGAAGCCTGGATAAACTGCTACTGCTGCTGAGTTCATGCGTAATGGTT
CTATAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis