Browse Element(s) Details

Os.38638.4.S1_s_at

Description

gb:CF315398
DB_XREF= gi:33687159
DB_XREF=HD--04-E22.b1
CLONE=HD--04-E22
TID=Os.38638.4
CNT=78
FEA=EST
TIER=Stack
STK=24
UG=Os.38638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsENOD93a mRNA for early nodulin, complete cds
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g05020	11/11	Early nodulin 93, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04960	OsAffx.12420.1.S1_at	2/11	6	+	2183984..2187338	hypothetical protein
LOC_Os06g04970	Os.17050.1.A1_at	10/11	6	+	2188914..2193837	expressed protein
LOC_Os06g04980	Os.3577.1.S1_x_at	5/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	Os.3577.2.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	OsAffx.4692.1.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04990	Os.38638.1.S1_at	11/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.38638.3.S1_x_at	7/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.37255.1.A1_at	1/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g05000	OsAffx.27459.2.S1_s_at	11/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	Os.38638.3.S1_x_at	2/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	OsAffx.27459.4.S1_at	1/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_x_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	Os.38638.3.S1_x_at	5/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.4.S1_s_at	11/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.3.S1_x_at	4/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05030	Os.31312.5.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05030	Os.31312.2.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05040	NA	NA	6	+	2221262..2227416	retrotransposon protein, putative, unclassified
LOC_Os06g05050	NA	NA	6	+	2228103..2232268	Protein kinase domain containing protein, expressed
LOC_Os06g05060	OsAffx.27460.1.S1_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_s_at	11/11	6	+	2233127..2238163	early flowering 3, putative, expressed
LOC_Os06g05060	Os.17510.1.S1_at	6/11	6	+	2233127..2238163	early flowering 3, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.38638.4.S1_s_at--1145--925	1	Chr06:2212427..2212451 (25 bp)	TCCTCGATCTCCTTGGGTTAATCAC	LOC_Os06g05020
Os.38638.4.S1_s_at--1069--45	1	Chr06:2212421..2212445 (25 bp)	ATCTCCTTGGGTTAATCACCTCCTT	LOC_Os06g05020
Os.38638.4.S1_s_at--383--789	1	Chr06:2212412..2212436 (25 bp)	GGTTAATCACCTCCTTCGCTTCAGA	LOC_Os06g05020
Os.38638.4.S1_s_at--749--1063	1	Chr06:2212398..2212422 (25 bp)	TTCGCTTCAGACTTTCTCTTCAGCT	LOC_Os06g05020
Os.38638.4.S1_s_at--340--1053	1	Chr06:2212393..2212417 (25 bp)	TTCAGACTTTCTCTTCAGCTCCCAT	LOC_Os06g05020
Os.38638.4.S1_s_at--194--363	1	Chr06:2212357..2212381 (25 bp)	CTTGATCGCGATGGCAACGGTGACC	LOC_Os06g05020
Os.38638.4.S1_s_at--817--1055	1	Chr06:2211782..2211806 (25 bp)	TTCTTCAGGCCATGAATTTCTCCTA	LOC_Os06g05020
Os.38638.4.S1_s_at--1110--521	1	Chr06:2211769..2211793 (25 bp)	GAATTTCTCCTAATCAACTAGCTAT	LOC_Os06g05020
Os.38638.4.S1_s_at--707--365	1	Chr06:2211703..2211727 (25 bp)	CTTCAGAAAGTGTTTGCTGTGTACT	LOC_Os06g05020
Os.38638.4.S1_s_at--121--693	1	Chr06:2211659..2211683 (25 bp)	GTATGTCTGTATCTCCAGTTTGTAG	LOC_Os06g05020
Os.38638.4.S1_s_at--121--691	1	Chr06:2211651..2211675 (25 bp)	GTATCTCCAGTTTGTAGTACTAATA	LOC_Os06g05020

Target Sequence

TCCTCGATCTCCTTGGGTTAATCACCTCCTTCGCTTCAGACTTTCTCTTCAGCTCCCATCCCATCATCGTCTTGATCGCG
ATGGCAACGGTGACCCGTGCTCACCTGGAGCAGAGGCTCGCCCTGGCCAAGCGCTGCTCGCGTGAGGCGAACATTGCAGG
GGTTAAGGCGGCTGCCGTTGCGACCATCGCCTCCGCCGTTCCAACCCTGGCGAGCGTGAGGATGCTGCCATGGGCGAAGG
CGAACATCAACCCGACGGGGCAGGCGCTGATCATCTGCACGGCGGCCGGGATGGCATACTTCGTGGCCGCCGACAAGAAG
ATCCTCTCGCTGGCGAGGAGGCACTCCTTCGAGAACGCACCGGAGCACCTCAAGAACACCTCCTTCCAGGGCGCCGGCCG
CCCTCACCCTGCCTTCTTCAGGCCATGAATTTCTCCTAATCAACTAGCTATAGAAAAAAAAAATGCTGCTTGCATTGCTA
GGCTAGCTGCTGCTTCAGAAAGTGTTTGCTGTGTACTTGGATCGATGTAGTATACTGTATGTCTGTATCTCCAGTTTGTA
GTACTAATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis