Browse Element(s) Details


OsAffx.23951.1.S1_x_at

Description gb:NM_190264.1
DB_XREF= gi:34907611
GEN=P0696G06.24
TID=OsAffx.23951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, F5I14.2 (P0696G06.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6710011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0009934biological_processregulation of meristem organization
GO:0005678cellular_componentchromatin assembly complex
GO:0042393molecular_functionhistone binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23951.1.S1_x_at--299--2971Chr01:39282540..39282564 (25 bp)
AATGTGGATGACTCTCAGCTGCAAA
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--871--2131Chr01:39283215..39283239 (25 bp)
ACAGAAAGAACAGAAGCGCCGTGAA
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--22--1431Chr01:39283292..39283316 (25 bp)
AGAAAGAACAGAAGCGCCGTGAGAA
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--381--8191Chr01:39283317..39283341 (25 bp)
GGAAGCTGTCCAACTCAAGAAGCAA
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--1023--5372Chr03:17431941..17431999 (25 bp)
GAAGCAACTGGCCATTCAGAAGCAA
NONE
OsAffx.23951.1.S1_x_at--106--5171Chr01:39283356..39283380 (25 bp)
GCAAGCTTCTATGATGGAACGGTTT
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--624--8131Chr01:39283423..39283447 (25 bp)
GGAAAGGACTCAGGCGTTCAAACTA
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--1058--6751Chr01:39283438..39283462 (25 bp)
GTTCAAACTACTGATCCATGCACCA
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--94--6371Chr01:39283450..39283474 (25 bp)
GATCCATGCACCACCAACAAAGAGG
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--769--7731Chr01:39283473..39283497 (25 bp)
GGTGGTACCATTGGTTACATCCATA
LOC_Os01g67100
OsAffx.23951.1.S1_x_at--569--51Chr01:39283498..39283522 (25 bp)
ATTGATTCTTCATTCTCTCAAAAAG
LOC_Os01g67100
Target Sequence 
AATGTGGATGACTCTCAGCTGCAAAAAAACACCTCAACTAATGAAAAAGATACTCAGAAAGCACAGAAACAAGTTGAAAA
GGAGCTAAAACAGAAGGAGAAAGAAGAAGCTCGAATGAGAAAACAACAAAAGAAACAGCAAGAAGAGGCGCTGAGAGAAC
AGAAACGACGTGAAAAGGAAGAAGCTGAAATGAAGAAACAGCAAAGGAAGCAGGAAGAGGAAGCACAGAAAGAACAGAAG
CGCCGTGAAAAGGAAGAAGCTGAAACGAGGAAGCAACAAAAGAAGCAGCAAGAGGAAGCTGAGAAAGAACAGAAGCGCCG
TGAGAAGGAAGCTGTCCAACTCAAGAAGCAACTGGCCATTCAGAAGCAAGCTTCTATGATGGAACGGTTTTTCAAAAATA
AGAAAGACAGTGAAAAGCTTGAGAAACCTGGAGGAAAGGACTCAGGCGTTCAAACTACTGATCCATGCACCACCAACAAA
GAGGTGGTACCATTGGTTACATCCATAATTGATTCTTCATTCTCTCAAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23951.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis