Browse Element(s) Details


OsAffx.11767.1.S1_at

Description tigr:9629.m06662
TID=OsAffx.11767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6708011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11767.1.S1_at--1020--8091Chr01:39270382..39270406 (25 bp)
GGACCTCAACGCGACATCGAGTAGT
LOC_Os01g67080
OsAffx.11767.1.S1_at--300--8071Chr01:39270156..39270180 (25 bp)
GGAGCAGCTCAAACTTCCCTGCCGA
LOC_Os01g67080
OsAffx.11767.1.S1_at--907--3332Chr03:27425050..27425074 (25 bp)
CACGGCGAGCACGTTGTACTGCCGG
NONE
OsAffx.11767.1.S1_at--113--2111Chr01:39270075..39270099 (25 bp)
ACAGGAGGAGGCAGTCCACGTCGAC
LOC_Os01g67080
OsAffx.11767.1.S1_at--745--991Chr01:39270070..39270094 (25 bp)
AGGAGGCAGTCCACGTCGACCGCGA
LOC_Os01g67080
OsAffx.11767.1.S1_at--889--1032Chr01:3463784..3463803 (20 bp)
AGGTGCTCGATGACGACGGTCTAAG
NONE
OsAffx.11767.1.S1_at--920--5771Chr01:39270035..39270059 (25 bp)
GACGACGGTCTAAGTGCGGGCATTC
LOC_Os01g67080
OsAffx.11767.1.S1_at--1101--4551Chr01:39270004..39270028 (25 bp)
GCGCCTTCGCGGACCATCGCGAGGA
LOC_Os01g67080
OsAffx.11767.1.S1_at--336--1731Chr01:39269992..39270016 (25 bp)
ACCATCGCGAGGAAGGCCTCCACGG
LOC_Os01g67080
OsAffx.11767.1.S1_at--418--4631Chr01:39269963..39269987 (25 bp)
GCGATGCGGCTTGGCTGGAACGGAA
LOC_Os01g67080
OsAffx.11767.1.S1_at--1136--6191Chr01:39269920..39269944 (25 bp)
GAGGCGTGGTCACCCGAGGCGGCAA
LOC_Os01g67080
Target Sequence 
GGACCTCAACGCGACATCGAGTAGTGGGAGGCGGGAGTCCGGCGGCCGGCAACGAGGTGGCGGCGGACCTCAACACGACG
TCGAGCAGCGGGAGGCGGGAGGCGGCCGCGGCCGACGACGACCTCGCCGCGGTGCGCGACCTGTGCGCCGACGCCGAGCA
GCCGTCGCTCCCGGACCCCTCCTCCCTCGAGCGGAGGCCCCGACCCCATCTTCCCCGACCGCCACCGGAGCAGCTCAAAC
TTCCCTGCCGACGCAAGCGCCACGGCGAGCACGTTGTACTGCCGGGTGGTCCGCCGTGCGCGCTGCGACAGGAGGAGGCA
GTCCACGTCGACCGCGAGGTGCTCGATGACGACGGTCTAAGTGCGGGCATTCGGGAGCGCGCCTTCGCGGACCATCGCGA
GGAAGGCCTCCACGGCGGGGCGATGCGGCTTGGCTGGAACGGAAGCGAAGGCGTCGAGGGCGGAGGCGTGGTCACCCGAG
GCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis