Browse Element(s) Details


Os.9738.1.S1_at

Description gb:AK065268.1
DB_XREF= gi:32975286
TID=Os.9738.1
CNT=212
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 60S ribosomal protein L5 (P0696G06.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002K21, full insert sequence.
FL= gb:AK065268.1 gb:AK104693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6713411/1160S ribosomal protein L5-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.2.S1_x_at11/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.1.S1_at10/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67200NANA1+39325126..39326849ribosomal protein L13 family protein, putative
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006913biological_processnucleocytoplasmic transport
GO:0007046biological_processribosome biogenesis
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0008097molecular_function5S rRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9738.1.S1_at--879--6512Chr01:39302385..39302409 (25 bp)
GATATTCACCGCAAGTACATCTACG
LOC_Os01g67134
Os.9738.1.S1_at--283--5172Chr01:39302395..39302419 (25 bp)
GCAAGTACATCTACGGTGGGCACGT
LOC_Os01g67134
Os.9738.1.S1_at--935--1912Chr01:39302407..39302431 (25 bp)
ACGGTGGGCACGTGGCTGACTACAT
LOC_Os01g67134
Os.9738.1.S1_at--172--5432Chr01:39302651..39302675 (25 bp)
GAACCTGAGAAATTCCAAGCCCACT
LOC_Os01g67134
Os.9738.1.S1_at--322--7392Chr01:39302679..39302703 (25 bp)
GTGAGTACCTCAAGAAGGGAATTGA
LOC_Os01g67134
Os.9738.1.S1_at--700--7032Chr01:39302725..39302749 (25 bp)
GTACAAGAAGGTCCATGCTGCCATC
LOC_Os01g67134
Os.9738.1.S1_at--865--3212Chr01:39302888..39302908 (21 bp)
CAAGAGATACAACCTCAAGAAGCTA
LOC_Os01g67134
Os.9738.1.S1_at--443--5572Chr01:39302939..39302963 (25 bp)
GAAAGATTGAATGCTCTCAACTCCT
LOC_Os01g67134
Os.9738.1.S1_at--305--1331Chr01:39303009..39303033 (25 bp)
AGAGTTTAGCCTTATCACAGTAGTT
LOC_Os01g67134
Os.9738.1.S1_at--8--9552Chr01:39303037..39303061 (25 bp)
TCTTTATGCTGCCAAACAAACTCCA
LOC_Os01g67134
Os.9738.1.S1_at--440--10092Chr01:39303194..39303218 (25 bp)
TATGTGAGAAGCTGCCGTTTGGATA
LOC_Os01g67134
Target Sequence 
GATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGTCTATGGCNGAGGAGGAACCTGAGAAATT
CCAAGCCCACTTNAGTGAGTACCTCAAGAAGGGAATTGANGCTGATGGCATGGAANCACTGTACAAGAAGGTCCATGCTG
CCATCCGTNGCNGATCCTACCATGGCCAAATCNACCAAGAAGGAACCGGCNACCCACAAGAGATACAACCTCAAGAAGCT
ANACCTACGANCAGAGGAAGGCCAGTCTNTGTCGAAAGATTGAATGCTCTCAACTCCTCNGCTGGTGCTGATGATGATGA
CGAGGAAGAGGATGANGAGTGANAGAGTTTAGCCTTATCACAGTAGTTNCATCTTTATGCTGCCAAACAAACTCCATATG
GCATTTAANNGTTCACCTGTATAGTCTTGCAANTTGCAACAGGCATTTTTGTTTATGTTCTGNACTCNGCTCAAAGAACC
TATTTCTTTCGGTTTTTGNTTCTCAACCTNGAGCTATCNGTTATCTTATTTATGTGAGAAGCTGCCGTTTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis