Browse Element(s) Details


Os.32192.1.S1_at

Description gb:AK105622.1
DB_XREF= gi:32990831
TID=Os.32192.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST D39962(S1657)~similar to Arabidopsis thaliana chromosome 3, At3g59690~unknown protein (P0696G06.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C07, full insert sequence.
FL= gb:AK105622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6709011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed
LOC_Os01g67100OsAffx.23951.1.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67100OsAffx.23951.3.S1_x_at11/111+39280512..39286189expressed protein
LOC_Os01g67110Os.6275.1.S1_at11/111+39286278..39287084expressed protein
LOC_Os01g67120Os.11976.1.S1_a_at10/111+39288157..39292980Rhodanese-like domain containing protein, expressed
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32192.1.S1_at--1061--1371Chr01:39276789..39276813 (25 bp)
AGAGCCTGACGAGCTGCCCGGCGTT
LOC_Os01g67090
Os.32192.1.S1_at--724--9151Chr01:39276825..39276849 (25 bp)
TGCCCAACTACATGACGCCGACGAT
LOC_Os01g67090
Os.32192.1.S1_at--924--1611Chr01:39276968..39276992 (25 bp)
AGCTGGGCCAAGAGCCCCTTCTGGA
LOC_Os01g67090
Os.32192.1.S1_at--250--491Chr01:39277133..39277157 (25 bp)
ATCGGCCGGAGGACGTTCAAGTAGT
LOC_Os01g67090
Os.32192.1.S1_at--972--2271Chr01:39277165..39277189 (25 bp)
AAATCGCTTGCGTCGTGTGTTTGAA
LOC_Os01g67090
Os.32192.1.S1_at--144--8771Chr01:39277182..39277206 (25 bp)
TGTTTGAATTCGTCGTGTCGTCGTC
LOC_Os01g67090
Os.32192.1.S1_at--1036--3671Chr01:39277215..39277239 (25 bp)
CTCGTCGTTCGTGCTTTGGTTGGTT
LOC_Os01g67090
Os.32192.1.S1_at--1038--2291Chr01:39277255..39277279 (25 bp)
AAATGGTGTGGGTTTCTCGTCGTCG
LOC_Os01g67090
Os.32192.1.S1_at--742--4011Chr01:39277275..39277299 (25 bp)
CGTCGTTGTCGTTGCATTGCATGGT
LOC_Os01g67090
Os.32192.1.S1_at--524--10731Chr01:39277291..39277315 (25 bp)
TTGCATGGTGCGTATGTGCGAGCTT
LOC_Os01g67090
Os.32192.1.S1_at--632--771Chr01:39277304..39277328 (25 bp)
ATGTGCGAGCTTGATGTGCGTGATT
LOC_Os01g67090
Target Sequence 
AGAGCCTGACGAGCTGCCCGGCGTTCGGCGGCGCACTGCCCAACTACATGACGCCGACGATGTCGGCGTCGGCCAAGGCG
AGGGCGCGCGCGCAGATGCTGCGGCAGCAGCAGGAGAAGCAGGCGCAGGCGGCGCAGGAGAAGCNGAGGTTCTCGTTCGG
CCTCGGCCAGAGCATCGGCAGCTGGGCCAAGAGCCCCTTCTGGAAGGGCGGCGCCGCCGCCGCTCCGCCGTCGATCTCGT
CGCGGGTTGCCACGCCGGCTGCGTCCGTCGCCGGCAGGCACCGGCCGACGCGGTCGTCGGTGAGCGAGCTCAGCGTCGAC
TCCGCCGTGTCCATGCCGGCCGGGATCGGCCGGAGGACGTTCAAGTAGTACGATCAAAATCGCTTGCGTCGTGTGTTTGA
ATTCGTCGTGTCGTCGTCGTCGACTCCTCGTCGTTCGTGCTTTGGTTGGTTTGGTGTTTAAGTGTAAAATGGTGTGGGTT
TCTCGTCGTCGTTGTCGTTGCATTGCATGGTGCGTATGTGCGAGCTTGATGTGCGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis