Browse Element(s) Details


Os.36346.2.S1_at

Description gb:AK073544.1
DB_XREF= gi:32983567
TID=Os.36346.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.42 (B1078G07.42), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041H18, full insert sequence.
FL= gb:AK073544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6703011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed
LOC_Os01g67070OsAffx.10645.2.S1_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67070OsAffx.10645.2.S1_x_at11/111+39265751..39266308hypothetical protein
LOC_Os01g67080OsAffx.11767.1.S1_at11/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.17718.1.A1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67080OsAffx.12420.1.S1_at1/111+39269886..39272487hypothetical protein
LOC_Os01g67090Os.32192.1.S1_at11/111+39273554..39277328IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36346.2.S1_at--1155--1791Chr01:39253022..39253046 (25 bp)
ACCGCCGGCGTGTATGATGCTACTG
LOC_Os01g67030
Os.36346.2.S1_at--847--8711Chr01:39253051..39253075 (25 bp)
TGTACACGGAGATGACACGATTTTA
LOC_Os01g67030
Os.36346.2.S1_at--509--3311Chr01:39253066..39253090 (25 bp)
CACGATTTTAGCGATACGTACGCCG
LOC_Os01g67030
Os.36346.2.S1_at--790--4131Chr01:39253093..39253117 (25 bp)
CGCTACGTGGGTAGCATGCGCGTAC
LOC_Os01g67030
Os.36346.2.S1_at--708--4631Chr01:39253112..39253136 (25 bp)
GCGTACGCGTACGTGCTTCTTTTTT
LOC_Os01g67030
Os.36346.2.S1_at--881--10371Chr01:39253145..39253169 (25 bp)
TTTTGGGTAGGTGTTATATGAGCGT
LOC_Os01g67030
Os.36346.2.S1_at--162--271Chr01:39253160..39253184 (25 bp)
ATATGAGCGTAGATGCTCTCTCCGT
LOC_Os01g67030
Os.36346.2.S1_at--790--10031Chr01:39253169..39253193 (25 bp)
TAGATGCTCTCTCCGTGTTCATGTT
LOC_Os01g67030
Os.36346.2.S1_at--807--9511Chr01:39253176..39253200 (25 bp)
TCTCTCCGTGTTCATGTTCGAGATG
LOC_Os01g67030
Os.36346.2.S1_at--1058--9271Chr01:39253180..39253204 (25 bp)
TCCGTGTTCATGTTCGAGATGGAGT
LOC_Os01g67030
Os.36346.2.S1_at--240--6251Chr01:39253197..39253221 (25 bp)
GATGGAGTACATTTATTTCGTGTAT
LOC_Os01g67030
Target Sequence 
ACCGCCGGCGTGTATGATGCTACTGGTGGTGTACACGGAGATGACACGATTTTAGCGATACGTACGCCGCGCGCTACGTG
GGTAGCATGCGCGTACGCGTACGTGCTTCTTTTTTTTATTTATTTTTGGGTAGGTGTTATATGAGCGTAGATGCTCTCTC
CGTGTTCATGTTCGAGATGGAGTACATTTATTTCGTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36346.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis