Browse Element(s) Details


OsAffx.23950.1.S1_at

Description tigr:9629.m06652
TID=OsAffx.23950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6699010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23950.1.S1_at--113--31Chr01:39233565..39233589 (25 bp)
ATTGGATCGACATGGTCCGACGGCA
LOC_Os01g66990
OsAffx.23950.1.S1_at--326--8391Chr01:39233524..39233548 (25 bp)
GGCGACGGTTCGACAGTACTCAAGG
LOC_Os01g66990
OsAffx.23950.1.S1_at--544--1991Chr01:39233496..39233520 (25 bp)
ACTCCGACAGGAGAGACGCATGGTG
LOC_Os01g66990
OsAffx.23950.1.S1_at--1141--3471Chr01:39233478..39233502 (25 bp)
CATGGTGGCCGACAGGAAAAAGCTC
LOC_Os01g66990
OsAffx.23950.1.S1_at--783--2691Chr01:39233459..39233483 (25 bp)
AAGCTCAAGGAATCGCTAGACCCGG
LOC_Os01g66990
OsAffx.23950.1.S1_at--78--10011Chr01:39233443..39233467 (25 bp)
TAGACCCGGGCCTGCCTTGTGGAAG
LOC_Os01g66990
OsAffx.23950.1.S1_at--178--1971Chr01:39233313..39233337 (25 bp)
ACTGTCGGCATCGAGTTTCTACTCA
LOC_Os01g66990
OsAffx.23950.1.S1_at--928--3371Chr09:6324436..6324455 (20 bp)
CACCAGCCACCACATAATGACTAAG
NONE
OsAffx.23950.1.S1_at--87--4592Chr03:26654154..26654178 (25 bp)
GCGCAATGTTAGTTGCCGACTTCGG
NONE
OsAffx.23950.1.S1_at--902--3931Chr01:39231417..39231441 (25 bp)
CGACTTCGGCAATACTGTGGGCCAA
LOC_Os01g66990
OsAffx.23950.1.S1_at--1138--4471Chr01:39230904..39230928 (25 bp)
GCCTGGCGATCTTTTGCTTTGAGGA
LOC_Os01g66990
Target Sequence 
ATTGGATCGACATGGTCCGACGGCAGCACACTGCTGCACATGGCGACGGTTCGACAGTACTCAAGGAGGACTCCGACAGG
AGAGACGCATGGTGGCCGACAGGAAAAAGCTCAAGGAATCGCTAGACCCGGGCCTGCCTTGTGGAAGGCGGTGCCAAGGT
CGAGGAGGTGGTGCTGGGCAGCATCGTGGTGGCATGAAAAGGGAGAGGAAATGGAAGGGATCAACAATAACGAAGGGAAT
AAGAAGGGGCCGACTGTCGGCATCGAGTTTCTACTCACCAGCCACCACATAATGACTAAGGGCAAGCGCAATGTTAGTTG
CCGACTTCGGCAATACTGTGGGCCAAGGGGTCAGATGACCTTTCTGGTTGGCATGGGCCTAGTATTGATAACATCTTTCT
ACCTCACCGTGATTCTTGATGCACATCCTCCTCTCATCACTGTATTGCTGTTCGTGCCTGTAACTGTCCTGGTGATTGTG
GCGGTCTGCGCGTGCGCGGGCCTGGCGATCTTTTGCTTTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis