Browse Element(s) Details


Os.7137.2.S1_x_at

Description gb:NM_190253.1
DB_XREF= gi:34907589
GEN=B1078G07.36
TID=Os.7137.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.36 (B1078G07.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1078G07.36 (B1078G07.36), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6698011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7137.2.S1_x_at--215--9271Chr01:39229475..39229499 (25 bp)
TCCGAAGCTTCGGTTCAGGCCAAAA
LOC_Os01g66980
Os.7137.2.S1_x_at--43--10691Chr01:39229316..39229336 (21 bp)
TTCCAGGCAATCTATCCGGTTCATG
LOC_Os01g66980
Os.7137.2.S1_x_at--547--9071Chr01:39229272..39229296 (25 bp)
TGCTTGCAAGTGTCAGATTCCTACC
LOC_Os01g66980
Os.7137.2.S1_x_at--568--10711Chr01:39229157..39229181 (25 bp)
TTGCTTGTTTCCAGCGCGAGAAGTC
LOC_Os01g66980
Os.7137.2.S1_x_at--769--5611Chr01:39228513..39228537 (25 bp)
GACAAGCTTGGCTCGTGATGCACCG
LOC_Os01g66980
Os.7137.2.S1_x_at--935--5071Chr01:39228494..39228518 (25 bp)
GCACCGCCAGTTCCAGGTTTTAGGA
LOC_Os01g66980
Os.7137.2.S1_x_at--1029--91Chr01:39227922..39227946 (25 bp)
ATTCTGCTGCAGATGCTTGGCAAAA
LOC_Os01g66980
Os.7137.2.S1_x_at--876--7811Chr01:39227893..39227917 (25 bp)
GGTCACCAAGTTCGTTCTTCAGGAA
LOC_Os01g66980
Os.7137.2.S1_x_at--1073--1351Chr01:39227702..39227726 (25 bp)
AGAGCTCGAGTCATCGTTTACGCCG
LOC_Os01g66980
Os.7137.2.S1_x_at--651--4491Chr01:39227681..39227705 (25 bp)
GCCGGGTTCATCATTCAGTTTCAGT
LOC_Os01g66980
Os.7137.2.S1_x_at--952--5411Chr01:39227639..39227663 (25 bp)
GAAGCCTGAATCTGATGAGACCTCA
LOC_Os01g66980
Target Sequence 
TCCGAAGCTTCGGTTCAGGCCAAAATGCCACGGCCACTTCCAGGCAATCTATCCGGTTCATGTCCATATCAAGAACTGCA
ATGCTTGCAAGTGTCAGATTCCTACCCACGGGTTGCTTGTTTCCAGCGCGAGAAGTCGTCCTGTCCTGCCAGTGTCGGCA
GTTGGATCAGGTAAGAGTGGATTTGCCTGGAAAGGCGACACAGAAGGTGTTTGATGAAGCCTTGACAAGCTTGGCTCGTG
ATGCACCGCCAGTTCCAGGTTTTAGGAAGTCCAAAGGAGGGAGAACATCAAATATACCAAGCAGCATTCTGCTGCAGATG
CTTGGCAAAAGCCGGGTCACCAAGTTCGTTCTTCAGGAAATACTCAGCATCACTGTTGGTGATTTTGTAAAGAAGGAAAA
CCTGAAGGTGAACCCTGAAATCAAGACAACCCAGTCAGAAGAAGAGCTCGAGTCATCGTTTACGCCGGGTTCATCATTCA
GTTTCAGTGTTGTTCTGCAGCTTGAGAAGCCTGAATCTGATGAGACCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7137.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis