Browse Element(s) Details


Os.7134.1.S1_at

Description gb:AK103300.1
DB_XREF= gi:32988509
TID=Os.7134.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1078G07.34 (B1078G07.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125C09, full insert sequence.
FL= gb:AK103300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6696011/1115 kDa selenoprotein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66920Os.34226.1.S2_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66920Os.34226.1.S1_at11/111+39190879..39194788calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g66930OsAffx.26327.1.S1_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26327.1.S1_s_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930Os.15412.1.S1_x_at11/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.26326.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66930OsAffx.16519.1.S1_at3/111+39195320..39201329transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008430molecular_functionselenium binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7134.1.S1_at--613--4831Chr01:39219522..39219546 (25 bp)
GCTCACATTCTCTGGTGCAATTATT
LOC_Os01g66960
Os.7134.1.S1_at--1153--10131Chr01:39219574..39219598 (25 bp)
TATCCAGAAATCGTGGGCTTCCTCG
LOC_Os01g66960
Os.7134.1.S1_at--923--2691Chr01:39219629..39219653 (25 bp)
AAGCTCGTTATGTCTATGGCTCTCC
LOC_Os01g66960
Os.7134.1.S1_at--1053--1491Chr01:39220169..39220193 (25 bp)
AGCACATTCGGCAGTTTCTCAAAGA
LOC_Os01g66960
Os.7134.1.S1_at--351--5951Chr01:39220223..39220247 (25 bp)
GAGCAACTGTCCTGAGCCAATGCAG
LOC_Os01g66960
Os.7134.1.S1_at--263--3211Chr01:39220258..39220282 (25 bp)
CAATGGTATTTGGTTATCTGCTAGC
LOC_Os01g66960
Os.7134.1.S1_at--1081--2411Chr01:39220284..39220308 (25 bp)
AAAAAACTCGCTGTCCATGCTGATC
LOC_Os01g66960
Os.7134.1.S1_at--175--9131Chr01:39220301..39220325 (25 bp)
TGCTGATCTGTTCCTAATTCTGAAA
LOC_Os01g66960
Os.7134.1.S1_at--1083--5491Chr01:39220343..39220367 (25 bp)
GAACACCTACTGTTTCCACAAGAGA
LOC_Os01g66960
Os.7134.1.S1_at--137--7871Chr01:39220389..39220413 (25 bp)
GGTATTCAGTAGTCACCCAAACATA
LOC_Os01g66960
Os.7134.1.S1_at--712--6571Chr01:39220429..39220453 (25 bp)
GATTCTTACATATGCCTCCATGAGG
LOC_Os01g66960
Target Sequence 
GCTCACATTCTCTGGTGCAATTATTGAGGTGTGCATGAGAAAGCTTGTGTTTTATCCAGAAATCGTGGGCTTCCTCGAAG
AGGATAAAGACGACTTCCCTTATGTGGAAGCTCGTTATGTCTATGGCTCTCCACCAAAGCTCATTATGCTTGATGACAAA
GGCGACCAGAAGGAGACTATAAGGATCGACAACTGGAAGAGGGAGCACATTCGGCAGTTTCTCAAAGAGAAGGTGAAGCC
AGTGAAGTCAGACAGCTGAGCAACTGTCCTGAGCCAATGCAGAAGGCATTCCCAATGGTATTTGGTTATCTGCTAGCNAA
AAAAACTCGCTGTCCATGCTGATCTGTTCCTAATTCTGAAATCTGAATAGCATATGTAGAACACCTACTGTTTCCACAAG
AGAGGCTGTTGTATGGCGTGCATTGGTATTCAGTAGTCACCCAAACATAATNAGTGTAATTCAGGATTCTTACATATGCC
TCCATGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis