Browse Element(s) Details


OsAffx.26326.1.S1_at

Description tigr:9632.m03321
TID=OsAffx.26326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3455010/11hypothetical protein
LOC_Os01g669303/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g216502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34490Os.54933.1.S1_at11/114+20694888..20698204Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34500OsAffx.22668.1.S1_x_at6/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.22668.1.S1_at5/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.12589.1.S1_at3/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34510Os.55435.1.S1_at10/114+20704855..20705437expressed protein
LOC_Os04g34520OsAffx.14134.1.S1_at10/114+20705951..20706916hypothetical protein
LOC_Os04g34530Os.53777.1.S1_at11/114+20710178..20715472Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34540Os.6272.1.S1_at10/114+20716788..20717943expressed protein
LOC_Os04g34550OsAffx.26326.1.S1_at10/114+20722436..20725489hypothetical protein
LOC_Os04g34560Os.15412.1.S1_x_at8/114+20725737..20727018transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g34570OsAffx.26327.3.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_at11/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.26327.1.S1_s_at8/114+20727524..20733043expressed protein
LOC_Os04g34570OsAffx.16519.1.S1_at3/114+20727524..20733043expressed protein
LOC_Os04g34580OsAffx.26328.1.S1_at11/114+20736777..20737918FAD binding domain containing protein, expressed
LOC_Os04g34590OsAffx.11069.5.S1_x_at11/114+20738513..20741527hypothetical protein
LOC_Os04g34600Os.15942.4.S1_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.1.S1_s_at11/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.15942.5.S1_x_at10/114+20747589..20748665ABA/WDS induced protein, expressed
LOC_Os04g34600Os.53912.1.S1_x_at4/114+20747589..20748665ABA/WDS induced protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26326.1.S1_at--556--9311Chr04:20723406..20723430 (25 bp)
TCCCGCTATCTCTCGAATTTCCATG
LOC_Os04g34550
OsAffx.26326.1.S1_at--311--611Chr04:20723428..20723448 (21 bp)
ATGCGCCCGCGTTCTGGATGTTTCA
LOC_Os04g34550
OsAffx.26326.1.S1_at--1136--7971Chr04:20723499..20723519 (21 bp)
GGATGTTTCATCATTTTTGGTACGA
LOC_Os04g34550
OsAffx.26326.1.S1_at--4--3591Chr04:20723506..20723530 (25 bp)
CATTTTTGGTACGACAGCGGCGACG
LOC_Os04g34550
OsAffx.26326.1.S1_at--96--5771Chr04:20723539..20723563 (25 bp)
GACGAGGTCGAAACAGCGTACGAGA
LOC_Os04g34550
OsAffx.26326.1.S1_at--10--7531Chr04:20723590..20723614 (25 bp)
GTGGAAACAGAGTACGACAGCGACG
LOC_Os04g34550
OsAffx.26326.1.S1_at--978--3491Chr04:20723627..20723651 (25 bp)
CATGGTACGACAGCGGGACGGAAAC
LOC_Os04g34550
OsAffx.26326.1.S1_at--785--1931NONE
ACGGAAACATCGGAGAGGCACAGGC
NONE
OsAffx.26326.1.S1_at--621--1054Chr05:7240585..7240609 (25 bp)
AGGTGGCAGATGGTCTCAGTTTTTT
NONE
OsAffx.26326.1.S1_at--197--9556Chr05:7240635..7240659 (25 bp)
TTTTCAAGTAAACATCCTACCCTAG
NONE
OsAffx.26326.1.S1_at--425--9256Chr05:7240649..7240673 (25 bp)
TCCTACCCTAGAAGGATATCCTCAC
NONE
Target Sequence 
TCCCGCTATCTCTCGAATTTCCATGCGCCCGCGTTCTGGATGTTTCATCATTTTTGGTACGACAGCGGCGACGACGGCGA
CGACGAGGTCGAAACAGCGTACGAGAGCGGCGGCGGCGACGACGATGACGAGGTGGAAACAGAGTACGACAGCGACGACG
AGGTGGAAGCATGGTACGACAGCGGGACGGAAACATCGGAGAGGCACAGGCGTGTGGGGTTGGCAAAAGTAAAGCTGAAG
GAGTTGATATTACTCAAGGTGGCAGATGGTCTCAGTTTTTTTTTGCTAGTGAACAGGAGGTTGTTATTTTCAAGTAAACA
TCCTACCCTAGAAGGATATCCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis