Browse Element(s) Details


Os.54933.1.S1_at

Description gb:AK107131.1
DB_XREF= gi:32992340
TID=Os.54933.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C05, full insert sequence.
FL= gb:AK107131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3449011/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34440Os.48106.1.A1_at11/114+20664871..20671082ubiquitin interaction motif-containing protein, putative, expressed
LOC_Os04g34450Os.14646.1.S1_at11/114+20675204..20685081expressed protein
LOC_Os04g34460Os.8479.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.8479.1.S1_s_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.49149.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34470OsAffx.14133.1.S1_at11/114+20689847..20690305hypothetical protein
LOC_Os04g34480NANA4+20693397..20693994Plastocyanin-like domain containing protein
LOC_Os04g34490Os.54933.1.S1_at11/114+20694888..20698204Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34500OsAffx.22668.1.S1_x_at6/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.22668.1.S1_at5/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.12589.1.S1_at3/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34510Os.55435.1.S1_at10/114+20704855..20705437expressed protein
LOC_Os04g34520OsAffx.14134.1.S1_at10/114+20705951..20706916hypothetical protein
LOC_Os04g34530Os.53777.1.S1_at11/114+20710178..20715472Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34540Os.6272.1.S1_at10/114+20716788..20717943expressed protein
LOC_Os04g34550OsAffx.26326.1.S1_at10/114+20722436..20725489hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54933.1.S1_at--264--1071Chr04:20695884..20695908 (25 bp)
AGGGTTCTTGGCAATGTCATGGTGT
LOC_Os04g34490
Os.54933.1.S1_at--634--1331Chr04:20695850..20695874 (25 bp)
AGAGGGCCGGTGTTCACGACTGCAT
LOC_Os04g34490
Os.54933.1.S1_at--1157--1811Chr04:20695823..20695847 (25 bp)
ACGCCTCTAATCCAGATCATTGCAG
LOC_Os04g34490
Os.54933.1.S1_at--285--7371Chr04:20695777..20695798 (22 bp)
GTGAGCAACTTCACCTTGGAACTGT
LOC_Os04g34490
Os.54933.1.S1_at--159--6731Chr04:20695298..20695322 (25 bp)
GTTCTGCTTTGGTTATCATGGGCCT
LOC_Os04g34490
Os.54933.1.S1_at--558--411Chr04:20695284..20695308 (25 bp)
ATCATGGGCCTGTATTTCGTTCTCT
LOC_Os04g34490
Os.54933.1.S1_at--116--1351Chr04:20695253..20695277 (25 bp)
AGAGTAAGGAGGCATCACCATCATC
LOC_Os04g34490
Os.54933.1.S1_at--1101--411Chr04:20695225..20695249 (25 bp)
ATCATCTCATCCAGCCAAGGAAGCT
LOC_Os04g34490
Os.54933.1.S1_at--154--4011Chr04:20695072..20695096 (25 bp)
CGTCGCACTCGACCGTGGATTAAAA
LOC_Os04g34490
Os.54933.1.S1_at--717--8951Chr04:20695018..20695042 (25 bp)
TGAAATTAGTCCTCACGGCAGAAAA
LOC_Os04g34490
Os.54933.1.S1_at--415--2431Chr04:20694995..20695019 (25 bp)
AAAAGATTTCCTGCCCTATATATAT
LOC_Os04g34490
Target Sequence 
AGGGTTCTTGGCAATGTCATGGTGTGTGGAGCAGAGAGGGCCGGTGTTCACGACTGCATTCACGCCTCTAATCCAGATCA
TTGCAGCTGCTATCAACGTCATCGTTCTCCGTGAGCAACTTCACCTTGGAACTGTGATAGGTTCTGCTTTGGTTATCATG
GGCCTGTATTTCGTTCTCTGGGGAAAGAGTAAGGAGGCATCACCATCATCATCATCATCTCATCCAGCCAAGGAAGCTGT
GCCTGTGCTGCAACAACAACACGGCCATGATGATCAAGAAACCACTAATGTACAGATGCAAACTGTCTAGTAATGTCGTA
ACAATAATTAACAAGCTATACGCAACGCATGCTCGCCGGTGAAGGACGTCGCACTCGACCGTGGATTAAAAGAAAAAATG
AATTCATATGCATCAAGTAGTGAAATTAGTCCTCACGGCAGAAAAAAGATTTCCTGCCCTATATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis