Browse Element(s) Details


OsAffx.14133.1.S1_at

Description tigr:9632.m03313
TID=OsAffx.14133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3447011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34440Os.48106.1.A1_at11/114+20664871..20671082ubiquitin interaction motif-containing protein, putative, expressed
LOC_Os04g34450Os.14646.1.S1_at11/114+20675204..20685081expressed protein
LOC_Os04g34460Os.8479.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.8479.1.S1_s_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.49149.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34470OsAffx.14133.1.S1_at11/114+20689847..20690305hypothetical protein
LOC_Os04g34480NANA4+20693397..20693994Plastocyanin-like domain containing protein
LOC_Os04g34490Os.54933.1.S1_at11/114+20694888..20698204Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34500OsAffx.22668.1.S1_x_at6/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.22668.1.S1_at5/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.12589.1.S1_at3/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34510Os.55435.1.S1_at10/114+20704855..20705437expressed protein
LOC_Os04g34520OsAffx.14134.1.S1_at10/114+20705951..20706916hypothetical protein
LOC_Os04g34530Os.53777.1.S1_at11/114+20710178..20715472Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14133.1.S1_at--661--1651Chr04:20689891..20689915 (25 bp)
AGCCCTGGGCGGTAGAAGCAGTAAC
LOC_Os04g34470
OsAffx.14133.1.S1_at--693--8531Chr04:20689928..20689952 (25 bp)
TGGAGACCGGTTGAGGCCACATCTA
LOC_Os04g34470
OsAffx.14133.1.S1_at--675--431Chr04:20689952..20689976 (25 bp)
ATCTTGCCTCCACTGAGTGCGGTAA
LOC_Os04g34470
OsAffx.14133.1.S1_at--618--7831Chr04:20689972..20689996 (25 bp)
GGTAAGCTTCACAACATTCCCTATT
LOC_Os04g34470
OsAffx.14133.1.S1_at--223--131Chr04:20690040..20690064 (25 bp)
ATTCATCCATGCTACCAAGCTTCGA
LOC_Os04g34470
OsAffx.14133.1.S1_at--722--991Chr04:20690064..20690088 (25 bp)
AGGATGTTGCCTCCATAATTGGATC
LOC_Os04g34470
OsAffx.14133.1.S1_at--329--9731Chr04:20690079..20690103 (25 bp)
TAATTGGATCCATGGTGCCGAGCTT
LOC_Os04g34470
OsAffx.14133.1.S1_at--765--811Chr04:20690090..20690114 (25 bp)
ATGGTGCCGAGCTTCAGGCTATTGC
LOC_Os04g34470
OsAffx.14133.1.S1_at--750--911Chr04:20690105..20690129 (25 bp)
AGGCTATTGCCACCACCGAGGATTC
LOC_Os04g34470
OsAffx.14133.1.S1_at--223--6171Chr04:20690122..20690146 (25 bp)
GAGGATTCACGCCAAGCTCCTTGGC
LOC_Os04g34470
OsAffx.14133.1.S1_at--1113--1771Chr04:20690236..20690260 (25 bp)
ACCGCCGCATTCACTGGATTTTTCA
LOC_Os04g34470
Target Sequence 
AGCCCTGGGCGGTAGAAGCAGTAACAGGTTGTGCGGGTGGAGACCGGTTGAGGCCACATCTATCTTGCCTCCACTGAGTG
CGGTAAGCTTCACAACATTCCCTATTCACCGCTTCCGTGGGCACTTCTCGAGCCGCCGCCGTCGTTGCCATTCATCCATG
CTACCAAGCTTCGAGGATGTTGCCTCCATAATTGGATCCATGGTGCCGAGCTTCAGGCTATTGCCACCACCGAGGATTCA
CGCCAAGCTCCTTGGCCGCCATCACCACAAGCCGGGTCGCGCTGTCCGCTCCTCCTCCACCACCGTTGACAACCACAACA
CCATCCTCTCCGGCCACCCACCTCTACCGCCGCATTCACTGGATTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis