Browse Element(s) Details


Os.48106.1.A1_at

Description gb:AK068951.1
DB_XREF= gi:32978975
TID=Os.48106.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003L17, full insert sequence.
FL= gb:AK068951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3444011/11ubiquitin interaction motif-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34390OsAffx.3995.1.S1_at11/114+20637914..20640322D-mannose binding lectin family protein, expressed
LOC_Os04g34400NANA4+20641066..20643086retrotransposon protein, putative, unclassified
LOC_Os04g34410OsAffx.12928.1.S1_at2/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.14131.1.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.30458.2.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410Os.51959.1.S2_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34420Os.51959.1.S1_at2/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420OsAffx.14131.1.S1_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420Os.51959.1.S2_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34430Os.22598.1.S1_at11/114+20659887..20664213transposon protein, putative, unclassified, expressed
LOC_Os04g34440Os.48106.1.A1_at11/114+20664871..20671082ubiquitin interaction motif-containing protein, putative, expressed
LOC_Os04g34450Os.14646.1.S1_at11/114+20675204..20685081expressed protein
LOC_Os04g34460Os.8479.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.8479.1.S1_s_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.49149.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34470OsAffx.14133.1.S1_at11/114+20689847..20690305hypothetical protein
LOC_Os04g34480NANA4+20693397..20693994Plastocyanin-like domain containing protein
LOC_Os04g34490Os.54933.1.S1_at11/114+20694888..20698204Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48106.1.A1_at--863--10331Chr04:20665293..20665317 (25 bp)
TTTCACTTGCTCCACCTGTTCAAAC
LOC_Os04g34440
Os.48106.1.A1_at--782--1531Chr04:20665263..20665287 (25 bp)
AGCATGCACCGTTGGTGGACTGCAT
LOC_Os04g34440
Os.48106.1.A1_at--114--8131Chr04:20665247..20665271 (25 bp)
GGACTGCATTAGAACCCGATGGCCA
LOC_Os04g34440
Os.48106.1.A1_at--230--3891Chr04:20665208..20665232 (25 bp)
CTGGGTTGGAGATATGCCTAGTATT
LOC_Os04g34440
Os.48106.1.A1_at--137--611Chr04:20665173..20665197 (25 bp)
ATGCCGCGTGCTAGTCTGATTTTAA
LOC_Os04g34440
Os.48106.1.A1_at--234--8311Chr04:20665145..20665169 (25 bp)
GGCTATTGCAGAGCAGGCTGCTTGA
LOC_Os04g34440
Os.48106.1.A1_at--165--8191Chr04:20665100..20665124 (25 bp)
GGAAGCCGCGAAAGTGACAGCTGCT
LOC_Os04g34440
Os.48106.1.A1_at--715--5711Chr04:20665071..20665095 (25 bp)
GACTCCTGGTGTTATCACTGTTCCA
LOC_Os04g34440
Os.48106.1.A1_at--827--4631Chr04:20665002..20665026 (25 bp)
GATGTAATTTTATCAGGGACCCGAA
LOC_Os04g34440
Os.48106.1.A1_at--1050--5672Chr01:239855..239877 (22 bp)
GACATTAGCTGTATACTCCATTTTA
NONE
Os.48106.1.A1_at--916--7031Chr04:20664899..20664923 (25 bp)
GTACACACACACCTTGTGGTTCTAT
LOC_Os04g34440
Target Sequence 
TTTCACTTGCTCCACCTGTTCAAACTTNTCAGCATGCACCGTTGGTGGACTGCATTAGAACCCGATGGCCACGGGCAGTT
TGTANCTGGGTTGGAGATATGCCTAGTATTGTNTGATGCCATGCCGCGTGCTAGTCTGATTTTAAAGTGGCTATTGCAGA
GCAGGCTGCTTGAGCTTNAAGNCCATGAGGGAAGGAAGCCGCGAAAGTGACAGCTGCTNCTGGACTCCTGGTGTTATCAC
TGTTCCAGCTGATGAATATATGATTTTTNTTGGTTGNGNGAATGATCCTTTGATGTAATTTTATCAGGGACCCGAACATT
NTTTTTCCTATAATGACATTAGCTGTATACTCCATTTTATGAATATGTTTTCAGTTCAAGATACATTCTTTTTTGTACAC
ACACACCTTGTGGTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48106.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis