Browse Element(s) Details


Os.22598.1.S1_at

Description gb:AK072998.1
DB_XREF= gi:32983021
TID=Os.22598.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143C23, full insert sequence.
FL= gb:AK072998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3443011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34380OsAffx.14132.1.S1_at11/114+20634694..20636204expressed protein
LOC_Os04g34390OsAffx.3995.1.S1_at11/114+20637914..20640322D-mannose binding lectin family protein, expressed
LOC_Os04g34400NANA4+20641066..20643086retrotransposon protein, putative, unclassified
LOC_Os04g34410OsAffx.12928.1.S1_at2/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.14131.1.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.30458.2.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410Os.51959.1.S2_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34420Os.51959.1.S1_at2/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420OsAffx.14131.1.S1_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420Os.51959.1.S2_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34430Os.22598.1.S1_at11/114+20659887..20664213transposon protein, putative, unclassified, expressed
LOC_Os04g34440Os.48106.1.A1_at11/114+20664871..20671082ubiquitin interaction motif-containing protein, putative, expressed
LOC_Os04g34450Os.14646.1.S1_at11/114+20675204..20685081expressed protein
LOC_Os04g34460Os.8479.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.8479.1.S1_s_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.49149.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22598.1.S1_at--596--10271Chr04:20660631..20660655 (25 bp)
TTTGCAACCTATCACACTTCTCAGG
LOC_Os04g34430
Os.22598.1.S1_at--1042--10571Chr04:20660614..20660638 (25 bp)
TTCTCAGGTGTCAAGTAGCAGCCCA
LOC_Os04g34430
Os.22598.1.S1_at--522--2191Chr04:20660432..20660614 (25 bp)
ACACAACCAGGCCTTGTAGATATGA
LOC_Os04g34430
Os.22598.1.S1_at--294--71Chr04:20660400..20660424 (25 bp)
ATTGCAAGGTGCTGTGCTTCTCTCT
LOC_Os04g34430
Os.22598.1.S1_at--592--4911Chr04:20660385..20660409 (25 bp)
GCTTCTCTCTTTTGAGCACAGCACG
LOC_Os04g34430
Os.22598.1.S1_at--802--5491Chr04:20660360..20660384 (25 bp)
GAACATGTAAGCTCCATCTTGGCGT
LOC_Os04g34430
Os.22598.1.S1_at--671--3811Chr04:20660349..20660373 (25 bp)
CTCCATCTTGGCGTCTTGTAGATTG
LOC_Os04g34430
Os.22598.1.S1_at--325--3731Chr04:20660205..20660229 (25 bp)
CTACTCTTTCTTTCTTGCAACTTGA
LOC_Os04g34430
Os.22598.1.S1_at--965--351Chr04:20660069..20660093 (25 bp)
ATAAGATGGCGTCTGCCTTTTGTGC
LOC_Os04g34430
Os.22598.1.S1_at--72--4451Chr04:20660055..20660079 (25 bp)
GCCTTTTGTGCGCAGGAAATGCTTC
LOC_Os04g34430
Os.22598.1.S1_at--264--4191Chr04:20659973..20659997 (25 bp)
CCCTAGGGAGGTCGACTTATGTACA
LOC_Os04g34430
Target Sequence 
TTTGCAACCTATCACACTTCTCAGGTGTCAAGTAGCAGCCCACACAACCAGGCCTTGTAGATATGAATGCCTCATTGCAA
GGTGCTGTGCTTCTCTCTTTTGAGCACAGCACGGAACATGTAAGCTCCATCTTGGCGTCTTGTAGATTGGAGGCTCGAGA
TGNTTAGATGTCATCCATCGACTATAGATGGCATGGACCAGCTAGAAATGGGCATATACATCATTGGTATGTAGCAGTTC
AATTAGTACAAGTAGCTNTAGTTACTAGCTACTCTTTCTTTCTTGCAACTTGAGTTNGATTATTTCTTATTGTAGTTGNC
ANGGTTGGTACTAAGAGCTGGNATTACCTCTTTACCTTAGNCCTGTATNAATGTATATATATATTCTCAGNTGTACAACT
TNTNGGCCATAAGATGGCGTCTGCCTTTTGTGCGCAGGAAATGCTTCAAGATGTAACCACAACTTAACTTATGTCATTCC
CCCTAGTCTTTCTGTTTTTCATTACCCTAGGGAGGTCGACTTATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis