Browse Element(s) Details


Os.51959.1.S1_at

Description gb:AK064414.1
DB_XREF= gi:32974432
TID=Os.51959.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-A10, full insert sequence.
FL= gb:AK064414.1 gb:AK101902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3437011/11D-mannose binding lectin family protein, expressed
LOC_Os04g344202/11D-mannose binding lectin family protein, expressed
LOC_Os04g343601/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34340OsAffx.26324.1.S1_at10/114+20610346..20611681hypothetical protein
LOC_Os04g34350OsAffx.22947.2.S1_x_at9/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.1.S1_x_at7/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.3.S1_x_at6/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.5.S1_x_at3/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34360Os.51959.1.S1_at1/114+20623729..20625862Protein kinase domain containing protein, expressed
LOC_Os04g34370Os.51959.1.S2_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34370Os.51959.1.S1_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34380OsAffx.14132.1.S1_at11/114+20634694..20636204expressed protein
LOC_Os04g34390OsAffx.3995.1.S1_at11/114+20637914..20640322D-mannose binding lectin family protein, expressed
LOC_Os04g34400NANA4+20641066..20643086retrotransposon protein, putative, unclassified
LOC_Os04g34410OsAffx.12928.1.S1_at2/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.14131.1.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.30458.2.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410Os.51959.1.S2_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34420Os.51959.1.S1_at2/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420OsAffx.14131.1.S1_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420Os.51959.1.S2_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51959.1.S1_at--56--2331Chr04:20631330..20631354 (25 bp)
AAAGAGGCCTACTTCACATACACCT
LOC_Os04g34370
Os.51959.1.S1_at--888--331Chr04:20631347..20631371 (25 bp)
ATACACCTTGTATGATGACACGGCT
LOC_Os04g34370
Os.51959.1.S1_at--186--10151Chr04:20631371..20631395 (25 bp)
TATCGTGCACGCTGGACTAGATGTC
LOC_Os04g34370
Os.51959.1.S1_at--110--3491Chr04:20631455..20631479 (25 bp)
CAGGCAGCCTGTAGTTCACTGTGAT
LOC_Os04g34370
Os.51959.1.S1_at--1030--8651Chr04:20631479..20631503 (25 bp)
TGTGTATGCAGTTTGTGGACCTTTC
LOC_Os04g34370
Os.51959.1.S1_at--933--1071Chr04:20631547..20631571 (25 bp)
AGGGCTTCTCCGTAAGATCACCGAA
LOC_Os04g34370
Os.51959.1.S1_at--898--6151Chr04:20631598..20631622 (25 bp)
GAGGTTGCATCAGGAATACTCCATT
LOC_Os04g34370
Os.51959.1.S1_at--571--1252Chr04:20631659..20631683 (25 bp)
AGATAAGTTCTACCCTATGCAAAGT
LOC_Os04g34370
Os.51959.1.S1_at--321--151Chr04:20631684..20631708 (25 bp)
ATTAGGTTACCCCACAATGCAGAAA
LOC_Os04g34370
Os.51959.1.S1_at--631--8691Chr04:20631710..20631734 (25 bp)
TGTGCAGGCTGCAACCAGTGGAGAT
LOC_Os04g34370
Os.51959.1.S1_at--809--8333Chr04:20657073..20657097 (25 bp)
GGCTGCTCCATTTGGCATGATGAGT
LOC_Os04g34420
Target Sequence 
AAAGAGGCCTACTTCACATACACCTTGTATGATGACACGGCTATCGTGCACGCTGGACTAGATGTCTTTGGGATAGGTTT
TGTGGGTATGTGGTTGGAAGGAAACCAAGAATGGTTCAAGAATTACAGGCAGCCTGTAGTTCACTGTGATGTGTATGCAG
TTTGTGGACCTTTCACAATCTGTGACGACAATAAGGATCTGTTCTGTGACTGTATGAAGGGCTTCTCCGTAAGATCACCG
AAGGATTGGGAGCTTGACGATCAAACAGGAGGTTGCATCAGGAATACTCCATTAAGTTGTGGAAGTAGCAAGGACAGGAC
AAGCCTCACAGATAAGTTCTACCCTATGCAAAGTATTAGGTTACCCCACAATGCAGAAAATGTGCAGGCTGCAACCAGTG
GAGATGAATGCTCACAGGTTTGCTTGAGCAACTGCTCCTGTACTGCATATTCCTATGGGAAAGATGGCTGCTCCATTTGG
CATGATGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis