Browse Element(s) Details


OsAffx.3995.1.S1_at

Description tigr:9632.m03304
TID=OsAffx.3995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3439011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34350OsAffx.22947.2.S1_x_at9/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.1.S1_x_at7/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.3.S1_x_at6/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.5.S1_x_at3/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34360Os.51959.1.S1_at1/114+20623729..20625862Protein kinase domain containing protein, expressed
LOC_Os04g34370Os.51959.1.S2_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34370Os.51959.1.S1_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34380OsAffx.14132.1.S1_at11/114+20634694..20636204expressed protein
LOC_Os04g34390OsAffx.3995.1.S1_at11/114+20637914..20640322D-mannose binding lectin family protein, expressed
LOC_Os04g34400NANA4+20641066..20643086retrotransposon protein, putative, unclassified
LOC_Os04g34410OsAffx.12928.1.S1_at2/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.14131.1.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.30458.2.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410Os.51959.1.S2_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34420Os.51959.1.S1_at2/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420OsAffx.14131.1.S1_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420Os.51959.1.S2_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34430Os.22598.1.S1_at11/114+20659887..20664213transposon protein, putative, unclassified, expressed
LOC_Os04g34440Os.48106.1.A1_at11/114+20664871..20671082ubiquitin interaction motif-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3995.1.S1_at--362--8131Chr04:20639744..20639768 (25 bp)
GGACTATCTTATTTGCATGACAGCT
LOC_Os04g34390
OsAffx.3995.1.S1_at--875--2151Chr04:20639763..20639787 (25 bp)
ACAGCTGCCGCGACTGCATTATACA
LOC_Os04g34390
OsAffx.3995.1.S1_at--1029--2331Chr04:20639798..20639822 (25 bp)
AAACCTCAAAACATACTTCTCAGTG
LOC_Os04g34390
OsAffx.3995.1.S1_at--74--7351Chr04:20639820..20639844 (25 bp)
GTGAATCATTCACTCCCAAAATTGC
LOC_Os04g34390
OsAffx.3995.1.S1_at--1007--7491Chr04:20639940..20639964 (25 bp)
GTGGAGTGCCTATCACACCAAAAGT
LOC_Os04g34390
OsAffx.3995.1.S1_at--484--10391Chr04:20640058..20640082 (25 bp)
TTATTTCCCAGTGAAAGTCGCGCAT
LOC_Os04g34390
OsAffx.3995.1.S1_at--268--1151Chr04:20640073..20640097 (25 bp)
AGTCGCGCATAAGCTTCTGGAGGGA
LOC_Os04g34390
OsAffx.3995.1.S1_at--848--10031Chr04:20640114..20640138 (25 bp)
TAGATCCCAACTTACATGGCGACGC
LOC_Os04g34390
OsAffx.3995.1.S1_at--1010--8451Chr04:20640130..20640154 (25 bp)
TGGCGACGCCAACTTAACAGAGGTT
LOC_Os04g34390
OsAffx.3995.1.S1_at--807--1191Chr04:20640198..20640222 (25 bp)
AGTTCGACCGACCTACTATGGGTGA
LOC_Os04g34390
OsAffx.3995.1.S1_at--1068--10251Chr04:20640248..20640272 (25 bp)
TTTGAACTTGACACACCTCCAATGC
LOC_Os04g34390
Target Sequence 
GGACTATCTTATTTGCATGACAGCTGCCGCGACTGCATTATACACTGTGATGTTAAACCTCAAAACATACTTCTCAGTGA
ATCATTCACTCCCAAAATTGCAGACTTTGGAATGGCAAAGTTTCTAGGAAGAGATTTTAGTCGAGTTTTGACTACAATGA
GAGGAACTATAGGATATCTTGCACCTGAATGGATTAGTGGAGTGCCTATCACACCAAAAGTTGATGTTTATAGCTATGGG
ATGGTTTTGTTGGAAATTGTTTCAGGAAGGAGGAATTCAAATGGAGGATGTATCACTGGTGGTGACAAAGATGTTTATTT
CCCAGTGAAAGTCGCGCATAAGCTTCTGGAGGGAGATGTAGAAAGCTTGATAGATCCCAACTTACATGGCGACGCCAACT
TAACAGAGGTTGAGAGAGTTTGCAAGGTTGCTTGTTGGTGTATTCAAGATAATGAGTTCGACCGACCTACTATGGGTGAA
GTGGTTCAAATTCTCGAGGGAATATTTGAACTTGACACACCTCCAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis