Browse Element(s) Details


OsAffx.14132.1.S1_at

Description tigr:9632.m03303
TID=OsAffx.14132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3438011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34340OsAffx.26324.1.S1_at10/114+20610346..20611681hypothetical protein
LOC_Os04g34350OsAffx.22947.2.S1_x_at9/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.1.S1_x_at7/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.3.S1_x_at6/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.5.S1_x_at3/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34360Os.51959.1.S1_at1/114+20623729..20625862Protein kinase domain containing protein, expressed
LOC_Os04g34370Os.51959.1.S2_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34370Os.51959.1.S1_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34380OsAffx.14132.1.S1_at11/114+20634694..20636204expressed protein
LOC_Os04g34390OsAffx.3995.1.S1_at11/114+20637914..20640322D-mannose binding lectin family protein, expressed
LOC_Os04g34400NANA4+20641066..20643086retrotransposon protein, putative, unclassified
LOC_Os04g34410OsAffx.12928.1.S1_at2/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.14131.1.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410OsAffx.30458.2.S1_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34410Os.51959.1.S2_at1/114+20647196..20650715D-mannose binding lectin family protein
LOC_Os04g34420Os.51959.1.S1_at2/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420OsAffx.14131.1.S1_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34420Os.51959.1.S2_at1/114+20655867..20658293D-mannose binding lectin family protein, expressed
LOC_Os04g34430Os.22598.1.S1_at11/114+20659887..20664213transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14132.1.S1_at--1035--5991Chr04:20634726..20634750 (25 bp)
GAGAGCACGACGCATCCCACAAATC
LOC_Os04g34380
OsAffx.14132.1.S1_at--649--2271Chr04:20634746..20634770 (25 bp)
AAATCTCACGCTTGCGAGCATCCGG
LOC_Os04g34380
OsAffx.14132.1.S1_at--621--2911Chr04:20634781..20634805 (25 bp)
AAGGATCCCTCAGTATCTCGAGCGA
LOC_Os04g34380
OsAffx.14132.1.S1_at--366--5891Chr04:20634800..20634824 (25 bp)
GAGCGATTCGCATCGTCCTCAGCGG
LOC_Os04g34380
OsAffx.14132.1.S1_at--706--5532Chr06:25475820..25475839 (20 bp)
GAAACAACTGGTACAAAGGAGACGT
NONE
OsAffx.14132.1.S1_at--719--8051Chr04:20634929..20634953 (25 bp)
GGAGATGCTCCGTCGCACATCTGCC
LOC_Os04g34380
OsAffx.14132.1.S1_at--525--971Chr04:20635029..20635053 (25 bp)
AGGAGGATTTCACGACTCGTCCGAG
LOC_Os04g34380
OsAffx.14132.1.S1_at--369--8551Chr04:20635109..20635133 (25 bp)
TAACTTACGGACAACGGGACAATGC
LOC_Os04g34380
OsAffx.14132.1.S1_at--788--1031Chr04:20635140..20635164 (25 bp)
AGGTCCAGCGATACATAATGCCCGA
LOC_Os04g34380
OsAffx.14132.1.S1_at--100--2091Chr04:20635152..20635176 (25 bp)
ACATAATGCCCGAATGCCCGATAAA
LOC_Os04g34380
OsAffx.14132.1.S1_at--576--4531Chr04:20635167..20635191 (25 bp)
GCCCGATAAAACACATGCTGCGCTT
LOC_Os04g34380
Target Sequence 
GAGAGCACGACGCATCCCACAAATCTCACGCTTGCGAGCATCCGGGCTAGCCCCCAAGGATCCCTCAGTATCTCGAGCGA
TTCGCATCGTCCTCAGCGGCGCATCTGCTAACATTTTGTGGAATAACAAAATATGCTTTCCCCCAAATCGAAGAAACAAC
TGGTACAAAGGAGACGTAGCGGCGGCGAGACCGTACCGCGGAGGGAGATGCTCCGTCGCACATCTGCCCCATCTCCGTCG
GCGGCGACGGCGGTCGGCGGACTGGCGCTGCTCGCCGCTCGCCGCTCGCCCCGCGCGCAGAGGAGGAGGATTTCACGACT
CGTCCGAGGCTGCAGGCCCATCGTCTTCATCACCGTGGCCGAAGAAGCCCACCACAGCCCACCTAACTTACGGACAACGG
GACAATGCCGCGACAGGTCCAGCGATACATAATGCCCGAATGCCCGATAAAACACATGCTGCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis