Browse Element(s) Details


OsAffx.26324.1.S1_at

Description tigr:9632.m03299
TID=OsAffx.26324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3434010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34300OsAffx.26322.1.S1_at11/114+20591822..20594248D-mannose binding lectin family protein
LOC_Os04g34309NANA4+20595451..20596078NA
LOC_Os04g34320OsAffx.26323.1.S1_at11/114+20597959..20600264S-locus glycoprotein family protein
LOC_Os04g34330OsAffx.14131.1.S1_at11/114+20602696..20605300D-mannose binding lectin family protein
LOC_Os04g34340OsAffx.26324.1.S1_at10/114+20610346..20611681hypothetical protein
LOC_Os04g34350OsAffx.22947.2.S1_x_at9/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.1.S1_x_at7/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.3.S1_x_at6/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.5.S1_x_at3/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34360Os.51959.1.S1_at1/114+20623729..20625862Protein kinase domain containing protein, expressed
LOC_Os04g34370Os.51959.1.S2_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34370Os.51959.1.S1_at11/114+20630519..20633266D-mannose binding lectin family protein, expressed
LOC_Os04g34380OsAffx.14132.1.S1_at11/114+20634694..20636204expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26324.1.S1_at--4--6331Chr04:20611582..20611606 (25 bp)
GATGAAGACGGAGCCCGATGGTGGC
LOC_Os04g34340
OsAffx.26324.1.S1_at--363--4271Chr04:20611480..20611504 (25 bp)
CCGGCGGCGGATGTCAGCGACGGAT
LOC_Os04g34340
OsAffx.26324.1.S1_at--485--7651Chr04:20611403..20611427 (25 bp)
GGGATGGAGCCCGAGTAGCGGCGGC
LOC_Os04g34340
OsAffx.26324.1.S1_at--924--7711NONE
GGTGGCGGTGATCCCAACCCCAGCA
NONE
OsAffx.26324.1.S1_at--1080--2591Chr04:20610411..20610435 (25 bp)
AACCCCAGCAAACAGGTGATGACGC
LOC_Os04g34340
OsAffx.26324.1.S1_at--1094--7751Chr04:20610397..20610421 (25 bp)
GGTGATGACGCTTATCATTGACTCT
LOC_Os04g34340
OsAffx.26324.1.S1_at--52--5812Chr09:242110..242129 (20 bp)
GACGCTTATCATTGACTCTGTTTGT
NONE
OsAffx.26324.1.S1_at--874--4892Chr09:242110..242129 (20 bp)
GCTTATCATTGACTCTGTTTGTTGC
NONE
OsAffx.26324.1.S1_at--951--9591Chr04:20610383..20610407 (25 bp)
TCATTGACTCTGTTTGTTGCGTTGC
LOC_Os04g34340
OsAffx.26324.1.S1_at--1034--10751Chr04:20610380..20610404 (25 bp)
TTGACTCTGTTTGTTGCGTTGCTTC
LOC_Os04g34340
OsAffx.26324.1.S1_at--173--2011Chr04:20610377..20610401 (25 bp)
ACTCTGTTTGTTGCGTTGCTTCTGG
LOC_Os04g34340
Target Sequence 
GATGAAGACGGAGCCCGATGGTGGCGACGGATGGGAGCGGAGCCCGAGCGGCGGCGGTGGATGGCGGCGGCGGCGGCGAT
GGAGGGGGCGGAGCCCGAGCGCCCGGCGGCGGATGTCAGCGACGGATGGGAGCAAAACCCGAGCGGCGGCGGCGGATGGC
GGCACCGCGGCAGTGGATGGGGATGGAGCCCGAGTAGCGGCGGCGGCGGTGGCGGTGATCCCAACCCCAGCAAACAGGTG
ATGACGCTTATCATTGACTCTGTTTGTTGCGTTGCTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis