Browse Element(s) Details


OsAffx.26323.1.S1_at

Description tigr:9632.m03297
TID=OsAffx.26323.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3432011/11S-locus glycoprotein family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein
LOC_Os04g34290OsAffx.26321.1.S1_at11/114+20581578..20584028D-mannose binding lectin family protein, expressed
LOC_Os04g34300OsAffx.26322.1.S1_at11/114+20591822..20594248D-mannose binding lectin family protein
LOC_Os04g34309NANA4+20595451..20596078NA
LOC_Os04g34320OsAffx.26323.1.S1_at11/114+20597959..20600264S-locus glycoprotein family protein
LOC_Os04g34330OsAffx.14131.1.S1_at11/114+20602696..20605300D-mannose binding lectin family protein
LOC_Os04g34340OsAffx.26324.1.S1_at10/114+20610346..20611681hypothetical protein
LOC_Os04g34350OsAffx.22947.2.S1_x_at9/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.1.S1_x_at7/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.3.S1_x_at6/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.5.S1_x_at3/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34360Os.51959.1.S1_at1/114+20623729..20625862Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26323.1.S1_at--153--1731Chr04:20599718..20599742 (25 bp)
ACCAGAGAACATCCTTCTCGATCAT
LOC_Os04g34320
OsAffx.26323.1.S1_at--508--10431Chr04:20599798..20599822 (25 bp)
TTAGCCGAGTTTTAACTACAACGAG
LOC_Os04g34320
OsAffx.26323.1.S1_at--1075--9831Chr04:20599814..20599838 (25 bp)
TACAACGAGAGGAACTGCGGGTTAC
LOC_Os04g34320
OsAffx.26323.1.S1_at--393--1331Chr04:20599930..20599954 (25 bp)
AGAGGAACTCATATGCCTCATGTCC
LOC_Os04g34320
OsAffx.26323.1.S1_at--880--591Chr04:20599942..20599966 (25 bp)
ATGCCTCATGTCCTTGTGGTGGTGA
LOC_Os04g34320
OsAffx.26323.1.S1_at--72--7751Chr04:20599962..20599986 (25 bp)
GGTGACCATGACGTTTATTTCCCGG
LOC_Os04g34320
OsAffx.26323.1.S1_at--65--211Chr04:20599978..20600002 (25 bp)
ATTTCCCGGTGCTTGTGGCGTGTAA
LOC_Os04g34320
OsAffx.26323.1.S1_at--812--8471Chr04:20599993..20600017 (25 bp)
TGGCGTGTAAGCTTCTTGACGGAGA
LOC_Os04g34320
OsAffx.26323.1.S1_at--803--2191Chr04:20600038..20600062 (25 bp)
ACAAATTACATGGTGGCATCGACAA
LOC_Os04g34320
OsAffx.26323.1.S1_at--246--6131Chr04:20600157..20600181 (25 bp)
GAGGGCCTAGTTGAAGTCGACATGC
LOC_Os04g34320
OsAffx.26323.1.S1_at--476--4391Chr04:20600189..20600213 (25 bp)
GCCAAGGCGACTTCAAGCAATAGCT
LOC_Os04g34320
Target Sequence 
ACCAGAGAACATCCTTCTCGATCATTCATTCAGTCCAAAAATTGCAGATTTTGGGATGGCAAAGCTTTTGGGAAGGGATT
TTAGCCGAGTTTTAACTACAACGAGAGGAACTGCGGGTTACCTTGCACCTGAATGGATTAGTGGTGTTCCTATTACAACA
AAAGTCGATGTTTACAGCTATGGGATGGTGTTGCTAGAAATAATATCAGGAAAGAGGAACTCATATGCCTCATGTCCTTG
TGGTGGTGACCATGACGTTTATTTCCCGGTGCTTGTGGCGTGTAAGCTTCTTGACGGAGATATGGGTGGTTTGGTTGATT
ACAAATTACATGGTGGCATCGACAAGAAGGAAGTTGAAAAGGCTTTCAAGGTTGCATGTTGGTGCATTCAAGACGATGAG
TTTAGTCGACCAACAATGGGAGGAGTGGTTCAAATTCTCGAGGGCCTAGTTGAAGTCGACATGCCTCCAATGCCAAGGCG
ACTTCAAGCAATAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis