Browse Element(s) Details


Os.15523.1.S1_at

Description gb:BM038551
DB_XREF= gi:16754172
DB_XREF=V004D11
CLONE=V004D11
TID=Os.15523.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15523 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g342701/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34230OsAffx.14129.1.S1_at11/114+20545911..20548551Zinc finger, C3HC4 type family protein
LOC_Os04g34240OsAffx.26320.1.S1_x_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240OsAffx.26320.1.S1_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240Os.47290.1.S1_at10/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34250OsAffx.3994.1.S1_at11/114+20554733..20557334D-mannose binding lectin family protein, expressed
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein
LOC_Os04g34290OsAffx.26321.1.S1_at11/114+20581578..20584028D-mannose binding lectin family protein, expressed
LOC_Os04g34300OsAffx.26322.1.S1_at11/114+20591822..20594248D-mannose binding lectin family protein
LOC_Os04g34309NANA4+20595451..20596078NA
LOC_Os04g34320OsAffx.26323.1.S1_at11/114+20597959..20600264S-locus glycoprotein family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15523.1.S1_at--61--4211NONE
CCCCATGAGTGAGGTACCCAGTTTC
NONE
Os.15523.1.S1_at--696--6151NONE
GAGGTACCCAGTTTCTCGAGGTTCT
NONE
Os.15523.1.S1_at--833--9951NONE
TACCCAGTTTCTCGAGGTTCTATCT
NONE
Os.15523.1.S1_at--217--3811NONE
CTCCATCCCCAGATTGCTTCATACT
NONE
Os.15523.1.S1_at--587--1991Chr04:20573006..20573032 (25 bp)
ACTCTTCAGGAGTTTAGATTCGAAA
LOC_Os04g34270
Os.15523.1.S1_at--840--10351NONE
TTTATATCGTAAGCTCCCTTCCGCT
NONE
Os.15523.1.S1_at--879--7051NONE
GTAAGCTCCCTTCCGCTTCATTATC
NONE
Os.15523.1.S1_at--186--4911NONE
GCTTCATTATCCCACCTTGTAAATG
NONE
Os.15523.1.S1_at--435--151NONE
ATTATCCCACCTTGTAAATGATGGT
NONE
Os.15523.1.S1_at--154--8751NONE
TGTAAATGATGGTACCCTTATTCCC
NONE
Os.15523.1.S1_at--518--2991NONE
AATGATGGTACCCTTATTCCCACTC
NONE
Target Sequence 
CCCCATGAGTGAGGTACCCAGTTTCTCGAGGTTCTATCTGAAGTTGAGACACCTCCATCCCCAGATTGCTTCATACTCTT
CAGGAGTTTAGATTCGAAAATAANGTAATCCCTAGTTTTGATCGTTGTTCGTTCACCTAGCTAGTTCTACACGTCACATT
TCTCATCTCCGTTTATATCGTAAGCTCCCTTCCGCTTCATTATCCCACCTTGTAAATGATGGTACCCTTATTCCCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis