Browse Element(s) Details


OsAffx.14129.1.S1_at

Description tigr:9632.m03287
TID=OsAffx.14129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=contains similarity to RING zinc finger protein gene_id:MVE11.15
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3423011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34170Os.25734.2.S1_a_at11/114+20520646..20522441transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g34180OsAffx.14126.1.S1_at10/114+20525809..20529890hypothetical protein
LOC_Os04g34190NANA4+20530951..20535317retrotransposon protein, putative, unclassified
LOC_Os04g34200OsAffx.14127.1.S1_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34200OsAffx.14127.1.S1_x_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34209NANA4+20539184..20539763NA
LOC_Os04g34220NANA4+20541428..20542663hypothetical protein
LOC_Os04g34230OsAffx.14129.1.S1_at11/114+20545911..20548551Zinc finger, C3HC4 type family protein
LOC_Os04g34240OsAffx.26320.1.S1_x_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240OsAffx.26320.1.S1_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240Os.47290.1.S1_at10/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34250OsAffx.3994.1.S1_at11/114+20554733..20557334D-mannose binding lectin family protein, expressed
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14129.1.S1_at--246--3171Chr04:20547336..20547360 (25 bp)
CAATTGTCCGGTGCGCGCTAAGGTG
LOC_Os04g34230
OsAffx.14129.1.S1_at--899--3971Chr04:20547344..20547368 (25 bp)
CGGTGCGCGCTAAGGTGTTCAAGCC
LOC_Os04g34230
OsAffx.14129.1.S1_at--770--10511Chr04:20547361..20547385 (25 bp)
TTCAAGCCGGATGGTGGTGGATCCT
LOC_Os04g34230
OsAffx.14129.1.S1_at--525--7731Chr04:20547376..20547400 (25 bp)
GGTGGATCCTGAGCCGAGTCGGGTC
LOC_Os04g34230
OsAffx.14129.1.S1_at--568--971Chr04:20547425..20547449 (25 bp)
AGGAGGAAGGCCCTCCGATCCATGC
LOC_Os04g34230
OsAffx.14129.1.S1_at--216--10151Chr04:20547451..20547475 (25 bp)
TATCCTTCTCTACTCAACTGGGTTG
LOC_Os04g34230
OsAffx.14129.1.S1_at--734--3731Chr04:20547463..20547487 (25 bp)
CTCAACTGGGTTGAAGCTCAATACT
LOC_Os04g34230
OsAffx.14129.1.S1_at--8--10751Chr04:20547473..20547497 (25 bp)
TTGAAGCTCAATACTGTGAGTCCTA
LOC_Os04g34230
OsAffx.14129.1.S1_at--468--7391Chr04:20547488..20547512 (25 bp)
GTGAGTCCTATGTGTGCAATCTGCC
LOC_Os04g34230
OsAffx.14129.1.S1_at--908--10111Chr04:20547496..20547520 (25 bp)
TATGTGTGCAATCTGCCTCTCCGAC
LOC_Os04g34230
OsAffx.14129.1.S1_at--791--3811Chr04:20547508..20547532 (25 bp)
CTGCCTCTCCGACTTTGAGGACGGG
LOC_Os04g34230
Target Sequence 
CAATTGTCCGGTGCGCGCTAAGGTGTTCAAGCCGGATGGTGGTGGATCCTGAGCCGAGTCGGGTCACGCGGCTGGCTCAG
AGCGGGCTGAGGAGGAAGGCCCTCCGATCCATGCCTATCCTTCTCTACTCAACTGGGTTGAAGCTCAATACTGTGAGTCC
TATGTGTGCAATCTGCCTCTCCGACTTTGAGGACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis