Browse Element(s) Details


Os.49208.1.S1_at

Description gb:AK110836.1
DB_XREF= gi:32996045
TID=Os.49208.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B01, full insert sequence.
FL= gb:AK110836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3427011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34230OsAffx.14129.1.S1_at11/114+20545911..20548551Zinc finger, C3HC4 type family protein
LOC_Os04g34240OsAffx.26320.1.S1_x_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240OsAffx.26320.1.S1_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240Os.47290.1.S1_at10/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34250OsAffx.3994.1.S1_at11/114+20554733..20557334D-mannose binding lectin family protein, expressed
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein
LOC_Os04g34290OsAffx.26321.1.S1_at11/114+20581578..20584028D-mannose binding lectin family protein, expressed
LOC_Os04g34300OsAffx.26322.1.S1_at11/114+20591822..20594248D-mannose binding lectin family protein
LOC_Os04g34309NANA4+20595451..20596078NA
LOC_Os04g34320OsAffx.26323.1.S1_at11/114+20597959..20600264S-locus glycoprotein family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49208.1.S1_at--235--4691Chr04:20572659..20572683 (25 bp)
GCGGAACAGCTATCACATCAAAAGT
LOC_Os04g34270
Os.49208.1.S1_at--606--5591Chr04:20572715..20572739 (25 bp)
GAAATCATTTCAGGAAGCAGGAACT
LOC_Os04g34270
Os.49208.1.S1_at--521--8171Chr04:20572734..20572758 (25 bp)
GGAACTCCAGTAAACAATCTTCGCG
LOC_Os04g34270
Os.49208.1.S1_at--945--2451Chr04:20572746..20572770 (25 bp)
AACAATCTTCGCGTGATGGCGTGCA
LOC_Os04g34270
Os.49208.1.S1_at--122--9351Chr04:20572754..20572778 (25 bp)
TCGCGTGATGGCGTGCATGAAGCTT
LOC_Os04g34270
Os.49208.1.S1_at--633--1151Chr04:20572776..20572800 (25 bp)
CTTGTTTCCCCGTGCAAGTTGCACG
LOC_Os04g34270
Os.49208.1.S1_at--128--2831Chr04:20572791..20572815 (25 bp)
AAGTTGCACGCAATCTTCTGAACAG
LOC_Os04g34270
Os.49208.1.S1_at--447--2131Chr04:20572824..20572848 (25 bp)
ACAGTCTGGTGGATGCAAACTTGCA
LOC_Os04g34270
Os.49208.1.S1_at--841--10351Chr04:20573106..20573130 (25 bp)
TTTATATCGTAAGCTTCCTTGCCGC
LOC_Os04g34270
Os.49208.1.S1_at--921--7051Chr04:20573114..20573138 (25 bp)
GTAAGCTTCCTTGCCGCTTCATTAT
LOC_Os04g34270
Os.49208.1.S1_at--776--10431Chr04:20573135..20573159 (25 bp)
TTATGCCACCCTTGTAATGATTGTA
LOC_Os04g34270
Target Sequence 
GCGGAACAGCTATCACATCAAAAGTGGACGTTTACAGNTATGGAATGGTTTTNNTAGAAATCATTTCAGGAAGCAGGAAC
TCCAGTAAACAATCTTCGCGTGATGGCGTGCATGAAGCTTGTTTCCCCGTGCAAGTTGCACGCAATCTTCTGAACAGAGA
CATTGACAGTCTGGTGGATGCAAACTTGCATGGTGAAGTGAANCTGGAGCAGGTTGAAAGAGTTTGCAAAGTCGCATGTT
GGTGTATTCAAGACAATGAGTTTGATCGACCCACAATGAGTGAGGTACTNCAGTTTCTCGAGGGTCTATCTGAAGTTGAG
ACACCTCCAATGCCAAGATTGCTTCATACTCTTGCAGGAGGNTTAGATTCGAAAATAATGTAATCACTAGTTTTGATCGT
TGTTCGTTCACCTAGGTAGTTCTACACGTCACATTTCTCATCTGCCGTTTATATCGTAAGCTTCCTTGCCGCTTCATTAT
GCCACCCTTGTAATGATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis