Browse Element(s) Details


OsAffx.26321.1.S1_at

Description tigr:9632.m03294
TID=OsAffx.26321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3429011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34250OsAffx.3994.1.S1_at11/114+20554733..20557334D-mannose binding lectin family protein, expressed
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein
LOC_Os04g34290OsAffx.26321.1.S1_at11/114+20581578..20584028D-mannose binding lectin family protein, expressed
LOC_Os04g34300OsAffx.26322.1.S1_at11/114+20591822..20594248D-mannose binding lectin family protein
LOC_Os04g34309NANA4+20595451..20596078NA
LOC_Os04g34320OsAffx.26323.1.S1_at11/114+20597959..20600264S-locus glycoprotein family protein
LOC_Os04g34330OsAffx.14131.1.S1_at11/114+20602696..20605300D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26321.1.S1_at--1137--5551Chr04:20583429..20583453 (25 bp)
GAAAGCTGTCAAGATTGTATCATAC
LOC_Os04g34290
OsAffx.26321.1.S1_at--51--10251Chr04:20583557..20583581 (25 bp)
TTTGACAACGGTGAGAGGAACTGCA
LOC_Os04g34290
OsAffx.26321.1.S1_at--268--5311Chr04:20583679..20583703 (25 bp)
GAAGGAACTCATATACCTCATCTCC
LOC_Os04g34290
OsAffx.26321.1.S1_at--1060--231Chr04:20583689..20583713 (25 bp)
ATATACCTCATCTCCTTGTGTTGGT
LOC_Os04g34290
OsAffx.26321.1.S1_at--426--10191Chr04:20583726..20583750 (25 bp)
TATTTTCCAGTGCTTGTGGTCCGTA
LOC_Os04g34290
OsAffx.26321.1.S1_at--1131--4331Chr04:20583732..20583756 (25 bp)
CCAGTGCTTGTGGTCCGTAAGCTTC
LOC_Os04g34290
OsAffx.26321.1.S1_at--156--7351Chr04:20583799..20583823 (25 bp)
GTGACATCAACATAAAAGAGGCCGA
LOC_Os04g34290
OsAffx.26321.1.S1_at--659--1051Chr04:20583815..20583839 (25 bp)
AGAGGCCGAAACAGCTTGCAAGGTT
LOC_Os04g34290
OsAffx.26321.1.S1_at--864--7811Chr04:20583909..20583933 (25 bp)
GGTCTAGTTGAAATTGACATACCCC
LOC_Os04g34290
OsAffx.26321.1.S1_at--506--6351Chr04:20583935..20583959 (25 bp)
GATGCCGAGGCTACTTGAAGCAATT
LOC_Os04g34290
OsAffx.26321.1.S1_at--46--2292Chr04:20583974..20583998 (25 bp)
AAATCCAACATGTACCTCATCTAGT
LOC_Os04g34290
Target Sequence 
GAAAGCTGTCAAGATTGTATCATACATTGTGATATTAAACCAGAAAACATCCTTCTAGATGATTTATTCATTCCAAAAAT
TGCTGATTTTGGTATGGCAAAGCTTTTGGGAAGGGATTTTAGCCGAGTTTTGACAACGGTGAGAGGAACTGCAGGTTACC
TTGCACCTGAATGGATTAGTGGTGTTCCTATAACACCAAAAGTCGATGTTTATAGCTATGGGATGGTCTTGCTAGAAATA
ATATCAGGAAGAAGGAACTCATATACCTCATCTCCTTGTGTTGGTGACCATGATGATTATTTTCCAGTGCTTGTGGTCCG
TAAGCTTCTTGATGGAGATATATGTGGTTTGGTTGATTATAGATTACATGGTGACATCAACATAAAAGAGGCCGAAACAG
CTTGCAAGGTTGCGTGTTGGTGCATTCAGGATAATGAGTTTAATCGACCAACAATGGATGAAGTGGTTCATATTCTCGAG
GGTCTAGTTGAAATTGACATACCCCCGATGCCGAGGCTACTTGAAGCAATTGTAGCTGGAAGCTCAAATCCAACATGTAC
CTCATCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis