Browse Element(s) Details


OsAffx.14131.1.S1_at

Description tigr:9632.m03298
TID=OsAffx.14131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3433011/11D-mannose binding lectin family protein
LOC_Os04g344201/11D-mannose binding lectin family protein, expressed
LOC_Os04g344101/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein
LOC_Os04g34290OsAffx.26321.1.S1_at11/114+20581578..20584028D-mannose binding lectin family protein, expressed
LOC_Os04g34300OsAffx.26322.1.S1_at11/114+20591822..20594248D-mannose binding lectin family protein
LOC_Os04g34309NANA4+20595451..20596078NA
LOC_Os04g34320OsAffx.26323.1.S1_at11/114+20597959..20600264S-locus glycoprotein family protein
LOC_Os04g34330OsAffx.14131.1.S1_at11/114+20602696..20605300D-mannose binding lectin family protein
LOC_Os04g34340OsAffx.26324.1.S1_at10/114+20610346..20611681hypothetical protein
LOC_Os04g34350OsAffx.22947.2.S1_x_at9/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.1.S1_x_at7/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.3.S1_x_at6/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34350OsAffx.22947.5.S1_x_at3/114+20615631..20620203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34360Os.51959.1.S1_at1/114+20623729..20625862Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14131.1.S1_at--84--2911Chr04:20604492..20604516 (25 bp)
AAGGTATCAAATTGCTCTTGGAGTT
LOC_Os04g34330
OsAffx.14131.1.S1_at--1132--1551Chr04:20604528..20604552 (25 bp)
AGCTTACCTTCATGATAGTTGCCAG
LOC_Os04g34330
OsAffx.14131.1.S1_at--135--6691Chr04:20604545..20604569 (25 bp)
GTTGCCAGGATTGCATTATACACTG
LOC_Os04g34330
OsAffx.14131.1.S1_at--1037--5271Chr04:20604650..20604674 (25 bp)
GAAGGGAGTTTACTCAAGTTCTCAC
LOC_Os04g34330
OsAffx.14131.1.S1_at--80--3231Chr04:20604664..20604688 (25 bp)
CAAGTTCTCACTACAATGCGAGGAA
LOC_Os04g34330
OsAffx.14131.1.S1_at--501--5211Chr04:20604808..20604832 (25 bp)
GAATTTGCAACTCGTGATGACTATG
LOC_Os04g34330
OsAffx.14131.1.S1_at--127--5231Chr04:20604832..20604856 (25 bp)
GAATATTTCCCTCTGTTAGTGGCAC
LOC_Os04g34330
OsAffx.14131.1.S1_at--258--6791Chr04:20604846..20604870 (25 bp)
GTTAGTGGCACATAAGCTGCTGGAT
LOC_Os04g34330
OsAffx.14131.1.S1_at--1103--3011Chr04:20604874..20604898 (25 bp)
AATGCTGGGAGTTTGGTGGACCAAA
LOC_Os04g34330
OsAffx.14131.1.S1_at--561--3473Chr04:20604942..20604966 (25 bp)
CAGGGTTGCATGCTGGTGTATTCAA
LOC_Os04g34330
OsAffx.14131.1.S1_at--46--6771Chr04:20605003..20605027 (25 bp)
GTTCAATATCTCGAAGGTCTTCTTG
LOC_Os04g34330
Target Sequence 
AAGGTATCAAATTGCTCTTGGAGTTGCTAGAGGACTAGCTTACCTTCATGATAGTTGCCAGGATTGCATTATACACTGTG
ACATTAAACCAGAGAACATACTTCTTGATGCATCATTTGTTCCAAAAATCGCAGATTTTGGGATGGCAAAGTTTCTGGGA
AGGGAGTTTACTCAAGTTCTCACTACAATGCGAGGAACTATAGGGTATCTTGCACCTGAGTGGATTAGTGGTACAGTTAT
TACATCAAAGGTTGATGTCTACAGCTATGGAATGGTTTTGCTGGAAATCATCTCAGGAACGAGGAACTCAAGCAAAGAAT
TTGCAACTCGTGATGACTATGAATATTTCCCTCTGTTAGTGGCACATAAGCTGCTGGATGGTAATGCTGGGAGTTTGGTG
GACCAAAATTTACATGGCGATGTTGATTTGGAGCAGGTAGAAAGAGCTTTCAGGGTTGCATGCTGGTGTATTCAAGATAA
TGAGCTTGATCGACCTACAATGAGTGAAGTTGTTCAATATCTCGAAGGTCTTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis