Browse Element(s) Details


Os.8479.1.S1_s_at

Description gb:AK070660.1
DB_XREF= gi:32980684
TID=Os.8479.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056J12, full insert sequence.
FL= gb:AK060398.1 gb:AK070660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3446011/11plastid-lipid associated protein PAP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34430Os.22598.1.S1_at11/114+20659887..20664213transposon protein, putative, unclassified, expressed
LOC_Os04g34440Os.48106.1.A1_at11/114+20664871..20671082ubiquitin interaction motif-containing protein, putative, expressed
LOC_Os04g34450Os.14646.1.S1_at11/114+20675204..20685081expressed protein
LOC_Os04g34460Os.8479.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.8479.1.S1_s_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34460Os.49149.1.S1_at11/114+20685947..20688981plastid-lipid associated protein PAP, putative, expressed
LOC_Os04g34470OsAffx.14133.1.S1_at11/114+20689847..20690305hypothetical protein
LOC_Os04g34480NANA4+20693397..20693994Plastocyanin-like domain containing protein
LOC_Os04g34490Os.54933.1.S1_at11/114+20694888..20698204Integral membrane protein DUF6 containing protein, expressed
LOC_Os04g34500OsAffx.22668.1.S1_x_at6/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.22668.1.S1_at5/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34500OsAffx.12589.1.S1_at3/114+20699906..20703257retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34510Os.55435.1.S1_at10/114+20704855..20705437expressed protein
LOC_Os04g34520OsAffx.14134.1.S1_at10/114+20705951..20706916hypothetical protein
LOC_Os04g34530Os.53777.1.S1_at11/114+20710178..20715472Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8479.1.S1_s_at--950--3271Chr04:20688446..20688470 (25 bp)
CAAACATCTTTGTGCTGGAGAGGGC
LOC_Os04g34460
Os.8479.1.S1_s_at--752--8231Chr04:20688468..20688492 (25 bp)
GGCAGACCCCTCAGAAGTTTGACAA
LOC_Os04g34460
Os.8479.1.S1_s_at--55--4471Chr04:20688512..20688536 (25 bp)
GCCTGCATATACATGGACATTCCGG
LOC_Os04g34460
Os.8479.1.S1_s_at--392--3291Chr04:20688537..20688561 (25 bp)
CAAAGATGCCTTTGCACATACCCGT
LOC_Os04g34460
Os.8479.1.S1_s_at--371--2031Chr04:20688552..20688576 (25 bp)
ACATACCCGTCCTGTAACACGGTGG
LOC_Os04g34460
Os.8479.1.S1_s_at--348--2151Chr04:20688568..20688592 (25 bp)
ACACGGTGGTTTTTAACAGCCAGTG
LOC_Os04g34460
Os.8479.1.S1_s_at--972--2151Chr04:20688583..20688607 (25 bp)
ACAGCCAGTGCAGATCGTGTGCTCA
LOC_Os04g34460
Os.8479.1.S1_s_at--12--7311Chr04:20688601..20688625 (25 bp)
GTGCTCAACTTTCCATTTGCGTTAG
LOC_Os04g34460
Os.8479.1.S1_s_at--949--2931Chr04:20688663..20688687 (25 bp)
AAGGCATTTCCCTTTGCGACAAAAT
LOC_Os04g34460
Os.8479.1.S1_s_at--444--451Chr04:20688812..20688836 (25 bp)
ATCTAATGAGTGTACAGCTTGGCAA
LOC_Os04g34460
Os.8479.1.S1_s_at--889--1531Chr04:20688827..20688851 (25 bp)
AGCTTGGCAAATGGCAATACCCTTT
LOC_Os04g34460
Target Sequence 
CAAACATCTTTGTGCTGGAGAGGGCAGACCCCTCAGAAGTTTGACAAGATTTATCTGAAGCAAAATGCCTGCATATACAT
GGACATTCCGGCAAAGATGCCTTTGCACATACCCGTCCTGTAACACGGTGGTTTTTAACAGCCAGTGCAGATCGTGTGCT
CAACTTTCCATTTGCGTTAGATTATACTACTGCTATTTTTTTTTCTTTCTGGAGCAAAAGGCATTTCCCTTTGCGACAAA
ATCATGCAAGCTGGGAAAGCTCATGCAAGTTCAGTTACACTACATAGAGAATTGGTACATTAAGAACTGGTGTACTTTTG
AATTTTGAAATACACCATTTTCAATTATTCATCCTTGTAAGACATAATCTAATGAGTGTACAGCTTGGCAAATGGCAATA
CCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8479.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis