Browse Element(s) Details


OsAffx.22668.1.S1_at

Description tigr:9631.m05512
TID=OsAffx.22668.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5635011/11hypothetical protein
LOC_Os04g345005/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56370Os.12046.1.S1_at11/113+32075835..32078449methyltransferase, putative, TIGR00027 family protein, expressed
LOC_Os03g56380Os.5746.1.S1_at11/113+32081109..32085607methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22668.1.S1_at--6--5332Chr03:32057533..32057555 (23 bp)
GAAGGTGTGGCGCTGCAGTAGTAGA
LOC_Os03g56350
OsAffx.22668.1.S1_at--707--3432Chr03:32057546..32057570 (25 bp)
CAGTAGTAGAGTGCAGATCGATGAG
LOC_Os03g56350
OsAffx.22668.1.S1_at--199--9732Chr03:32057711..32057735 (25 bp)
TCAAGTGGATCGAAAGTTATAGGAA
LOC_Os03g56350
OsAffx.22668.1.S1_at--99--2932Chr03:32057744..32057768 (25 bp)
AAGGAATGAGTGAGCATGTTGTTGA
LOC_Os03g56350
OsAffx.22668.1.S1_at--114--6332Chr03:32057767..32057791 (25 bp)
GATGAAGGTCCAAGTGATGTTGCAC
LOC_Os03g56350
OsAffx.22668.1.S1_at--246--6291Chr03:32057782..32057806 (25 bp)
GATGTTGCACTGGTTGATGGTTCTA
LOC_Os03g56350
OsAffx.22668.1.S1_at--234--5111Chr03:32057788..32057812 (25 bp)
GCACTGGTTGATGGTTCTATAGAGA
LOC_Os03g56350
OsAffx.22668.1.S1_at--47--6731Chr03:32057801..32057825 (25 bp)
GTTCTATAGAGATGAAGCGGAGTTC
LOC_Os03g56350
OsAffx.22668.1.S1_at--960--6311Chr03:32057811..32057835 (25 bp)
GATGAAGCGGAGTTCAGTTGATGAT
LOC_Os03g56350
OsAffx.22668.1.S1_at--759--2491Chr03:32057884..32057908 (25 bp)
AACATCGGCCTGCTAGTTCTAGGTT
LOC_Os03g56350
OsAffx.22668.1.S1_at--628--3551Chr03:32057886..32057910 (25 bp)
CATCGGCCTGCTAGTTCTAGGTTTT
LOC_Os03g56350
Target Sequence 
GAAGGTGTGGCGCTGCAGTAGTAGAGTGCAGATCGATGAGGCATGGTGGAAAGGTTTTCTTCAAATGCGAGGAAAACGAA
CAAGATGTGCCAAATTGTTGCAAGTTTTTCAAGTGGATCGAAAGTTATAGGAAGATGGTTGAAGGAATGAGTGAGCATGT
TGTTGATGAAGGTCCAAGTGATGTTGCACTGGTTGATGGTTCTATAGAGATGAAGCGGAGTTCAGTTGATGATGGAAAGA
TTGATAAGCTGATAAATTTGATTGAAGTATTGGTGATGATCAACATCGGCCTGCTAGTTCTAGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis