Browse Element(s) Details


Os.19413.1.S1_at

Description gb:BM421229
DB_XREF= gi:18388031
DB_XREF=V003A09
CLONE=V003A09
TID=Os.19413.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.19413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0094O03.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5632011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56270Os.6210.1.S1_at11/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56270OsAffx.2349.1.S1_at1/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56350OsAffx.22668.1.S1_x_at11/113+32057392..32057940hypothetical protein
LOC_Os03g56360OsAffx.10439.1.S1_at11/113+32058723..32070694transposon protein, putative, Mutator sub-class
LOC_Os03g56360Os.46514.1.S1_at1/113+32058723..32070694transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19413.1.S1_at--42--7871Chr03:32048944..32048968 (25 bp)
GGTTTAACGCACCAGCAGTTGATGA
LOC_Os03g56320
Os.19413.1.S1_at--295--6351Chr03:32048973..32048997 (25 bp)
GATGCTGAAACCGTATGTGTGTAAT
LOC_Os03g56320
Os.19413.1.S1_at--910--6031Chr03:32049008..32049032 (25 bp)
GAGATACAATCCAACAGTTTCATGA
LOC_Os03g56320
Os.19413.1.S1_at--922--9251Chr03:32049039..32049063 (25 bp)
TCCTGCCAACAGATGATAATGCGAT
LOC_Os03g56320
Os.19413.1.S1_at--298--3091Chr03:32049106..32049130 (25 bp)
AATATCAGGGCATTAGAGTCCATTC
LOC_Os03g56320
Os.19413.1.S1_at--896--6091Chr03:32049121..32049145 (25 bp)
GAGTCCATTCCCTATTTGAAGCTGA
LOC_Os03g56320
Os.19413.1.S1_at--582--2691Chr03:32049139..32049163 (25 bp)
AAGCTGACGTGCTCTGTGGAGTCCA
LOC_Os03g56320
Os.19413.1.S1_at--943--5672Chr03:32049185..32049209 (25 bp)
GACATTGTTGGATAGCTTTGTTCTT
LOC_Os03g56320
Os.19413.1.S1_at--794--3631Chr03:32049207..32049231 (25 bp)
CTTGCTGTTATGTTGCTGGGTGTCT
LOC_Os03g56320
Os.19413.1.S1_at--961--7711Chr03:32049224..32049248 (25 bp)
GGGTGTCTCCATTTCGACTTTTCAA
LOC_Os03g56320
Os.19413.1.S1_at--917--10291Chr03:32049235..32049259 (25 bp)
TTTCGACTTTTCAAGCCCCAATTAT
LOC_Os03g56320
Target Sequence 
GGTTTAACGCACCAGCAGTTGATGAAGATGATGCTGAAACCGTATGTGTGTAATACTAATCGTGGAGATACAATCCAACA
GTTTCATGATGTACATCCTGCCAACAGATGATAATGCGATGAAGGGATCTAACAGTAAATGCCAATATGAAAAGCAAATA
TAAATATCAGGGCATTAGAGTCCATTCCCTATTTGAAGCTGACGTGCTCTGTGGAGTCCAGANNAACAATATTATGAAAG
AGTGACATTGTTGGATAGCTTTGTTCTTGCTGTTATGTTGCTGGGTGTCTCCATTTCGACTTTTCAAGCCCCAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis